TCONS_00053499-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053499-protein
Unique NameTCONS_00053499-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length808

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053499-protein ID=TCONS_00053499-protein|Name=TCONS_00053499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=808bp
MVAVIHKPEQLILNLQTMALCEHRNVRINTTTITDAESIVMMEHPQQTPQ
PTQPTQQQAPLQQSFPTEYHHNGTILAKLTQMLDQQQRTPDVNFKENLSQ
NFTSAELLALKQQAIQQQQHQQRFSGGGNFHPNQQPQPQIPLKKGRDRIA
SADYIYGNGGRIPLAKKTMTPAPHSRSVSTSDFYDLQKEDDPTEKHINKN
ILIEPMTSSSTFLQPTPPRSRSPSPSVSDGDSGYSSKQMSPVSLHNFQPV
EAAPPISPNNRFSGPNNYNKNYTNTGLTSYQDNYDGSRMSVMSPTHAKSA
SLPSTGSMNTRPSPTNDVFTQDILLENYKQQQILVEKYKQQLAMLDNIKK
QALMQRIHDAKQLEQQQNLERNLSTTSSNNDLNGSVGSNELNGKLDNPDE
QYEVFKRHLSQQDSPTQQQNFPSGPMRKLSTGSGGSTKDAQLAEQFKQLS
MQDTMQKRTLAMQESIRQTLAAASTTNGNDMNNNSLPPSSGAPGAFDAAR
NLEELNIIDMLADPRWSGSKQYRGFEEGRDMSRRDNDIHDPTYTWSGHLP
PKIYKNPIYSNKVFLGGVPWDITEAGLQQAFRPFGALSIEWPGKDGKHSR
HPPKGYVYLLFESEKSVKNLLANCTHDFSNGGDWYYKISSRRMRCKEVQA
IPWVLSDSNFVRTSSQRLDSSRTVFVGGLHGMINAEALCQIMNDLFDGVV
YSGIDTDKHKYPIGSGRVTFNNNRSFMKAVQASFIEIRSPKFTKKVQIDP
YLEDAMCSQCQFNPGPFFCRSVECFKYFCHSCWSWHHSIDNLRMHRPLTR
HSKNSDSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033774XLOC_033774Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053499TCONS_00053499Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR032296CEBP_ZZ
IPR034977CPEB1_RRM1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 335..355
NoneNo IPR availableGENE3D3.30.70.330coord: 43..650
e-value: 5.0E-10
score: 38.8
NoneNo IPR availableGENE3D3.30.70.330coord: 660..748
e-value: 6.2E-4
score: 19.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 475..496
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..314
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 373..397
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 409..438
NoneNo IPR availableCDDcd12725RRM2_CPEB1coord: 669..754
e-value: 1.28082E-56
score: 187.602
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 562..637
e-value: 1.9E-5
score: 34.1
coord: 673..745
e-value: 1.4
score: 5.2
IPR000504RNA recognition motif domainPFAMPF16367RRM_7coord: 560..652
e-value: 5.2E-31
score: 106.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 561..650
score: 10.36
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 559..731
IPR032296Cytoplasmic polyadenylation element-binding protein, ZZ domainPFAMPF16366CEBP_ZZcoord: 744..800
e-value: 3.7E-22
score: 78.2
IPR034977CPEB-1, RNA recognition motif 1CDDcd12723RRM1_CPEB1coord: 559..658
e-value: 3.57741E-71
score: 228.834

Blast
[Close]
BLAST of TCONS_00053499-protein vs. Swiss-Prot (Human)
Match: CPEB1 (Cytoplasmic polyadenylation element-binding protein 1 OS=Homo sapiens GN=CPEB1 PE=1 SV=1)

HSP 1 Score: 428.713 bits (1101), Expect = 2.993e-141
Identity = 204/318 (64.15%), Postives = 240/318 (75.47%), Query Frame = 0 
Query:  512 ADPRWSGSKQYRGFE-------------EGRDMSRRDNDIHDPTYTWSGHLPPKIYKNPIYSNKVFLGGVPWDITEAGLQQAFRPFGALSIEWPGKDGKHSRHPPKG-----YVYLLFESEKSVKNLLANCTHD-FSNGG--DWYYKISSRRMRCKEVQAIPWVLSDSNFVRTSSQRLDSSRTVFVGGLHGMINAEALCQIMNDLFDGVVYSGIDTDKHKYPIGSGRVTFNNNRSFMKAVQASFIEIRSPKFTKKVQIDPYLEDAMCSQCQFNPGPFFCRSVECFKYFCHSCWSWHHSIDNLRMHRPLTRHSKNSDSS 808
            A  RW G+  +  ++             E R + R+   +++ T TWSG LPP+ YKNPIYS KVFLGGVPWDITEAGL   FR FG+LS+EWPGKDGKH R PPKG     YVYL+FE EKSV++LL  C+HD  S  G  ++Y+K+SSRRMRCKEVQ IPWVL+DSNFVR+ SQRLD SRTVFVG LHGM+NAEAL  I+NDLF GVVY+GIDTDKHKYPIGSGRVTFNN RS++KAV A+F+EI++ KFTKKVQIDPYLED++C  C   PGPFFCR   CFKYFC SCW W HS++ LR H PL R+ KN DSS
Sbjct:  250 ASKRWPGASVWPSWDLLEAPKDPFSIEREAR-LHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGNMPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS 566
The following BLAST results are available for this feature:
BLAST of TCONS_00053499-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPEB12.993e-14164.15Cytoplasmic polyadenylation element-binding protei... [more]
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