TCONS_00053455-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053455-protein
Unique NameTCONS_00053455-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length538

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053455-protein ID=TCONS_00053455-protein|Name=TCONS_00053455-protein|organism=Clytia hemisphaerica|type=polypeptide|length=538bp
CLTSYDILCDVYIIKKMSRVYDAIEPSVIDELLLKLSVEEQGPKSEAGKI
AKKEGIDFKDVSELRLDFKNILKIDNLWQFTKLVKLQLDNNFIEKIDGLG
SLVNLQWLDLSFNNIEVIEGLDQLTKLRDLTFYNNKITTVGNMDTLTELQ
ILSLGNNQLGTLTDLVYLRRFEKLNTLTLGGNPFCKTDEYYKYTIAHLPK
LVYLNYRLIDDVKRDEAVEAYHDSIEALLHDEAIVQNKRIEQEESDSQRV
IHKEAFVEDLNTSLLFESMFEEDAEASKLEQLPGVEELLQTYRETFNDVC
MKLFEFGLKDRVKRKEEIDSFFQALNDAIQQNLKESLQPIQEFESQKGKV
FSELVNCTDQETAEKRIAELSDSITALWDILMGLEMQLVDQLEESIKDFE
RNMADLVGSFVENVQELISQLRTLESNHHEKLSDIAVVTLEKLMKNELEE
EMNDDVRVLFVDKDTIVNAVSASHDAHTFRIDNKEDDIVTRSNTRVQTLI
EMIHADEIKRNRTRVNEINTLLDHYRDEIENFENSLGL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033748XLOC_033748Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053455TCONS_00053455Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 515..535
NoneNo IPR availableCOILSCoilCoilcoord: 389..409
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 124..145
e-value: 13.0
score: 14.7
coord: 102..123
e-value: 0.0045
score: 26.2
coord: 146..176
e-value: 59.0
score: 9.3
coord: 80..101
e-value: 47.0
score: 10.1
NoneNo IPR availableGENE3D1.20.5.1230coord: 284..536
e-value: 0.0017
score: 17.7
NoneNo IPR availablePFAMPF14580LRR_9coord: 86..224
e-value: 6.4E-17
score: 61.5
NoneNo IPR availableSUPERFAMILY52075Outer arm dynein light chain 1coord: 58..220
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 146..169
e-value: 7.4
score: 14.3
coord: 102..124
e-value: 6.0
score: 15.1
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 45..255
e-value: 1.6E-29
score: 101.9
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 126..147
score: 7.05
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 82..103
score: 8.043
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 148..169
score: 7.774
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 173..194
score: 5.024
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 104..125
score: 9.814

Blast
[Close]
BLAST of TCONS_00053455-protein vs. Swiss-Prot (Human)
Match: DRC3 (Dynein regulatory complex subunit 3 OS=Homo sapiens GN=DRC3 PE=2 SV=2)

HSP 1 Score: 517.309 bits (1331), Expect = 3.076e-180
Identity = 263/518 (50.77%), Postives = 376/518 (72.59%), Query Frame = 0 
Query:   17 MSRVYDAIEPSVIDELLLKLSVEEQGPKSEAGKIAKKEGIDFKDVSELRLDFKNILKIDNLWQFTKLVKLQLDNNFIEKIDGLGSLVNLQWLDLSFNNIEVIEGLDQLTKLRDLTFYNNKITTVGNMDTLTELQILSLGNNQLGTLTDLVYLRRFEKLNTLTLGGNPFCKTDEYYKYTIAHLPKLVYLNYRLIDDVKRDEAVEAYHDSIEALLHDEAIVQNKRIEQEESDSQRV-IHKEAFVEDLNTSLLFESMFEEDAEASKLEQLPGVEELLQTYRETFNDVCMKLFEFGLKDRVKRKEEIDSFFQALNDAIQQNLKESLQPIQEFESQKGKVFSELVNCTDQETAEKRIAELSDSITALWDILMGLEMQLVDQLEESIKDFERNMADLVGSFVENVQELISQLRTLESNHHEKLSDIAVVTLEKLMKNELEEEMNDDVRVLFVDKDTIVNAVSASHDAHTFRIDNKEDDIVTRSNTRVQTLIEMIHADEIKRNRTRVNEINTLLDHYRDEIENFE 533
            M++  +++EP V+D+ +LKL+V +QGP+ EAG++AK+EGI FKDV  L+LDF+NIL+IDNLWQF  L KLQLDNN IEKI+GL +L +L WLDLSFNNIE IEGLD L  L DL+ +NN+I+ + ++D L +LQ+LSLGNN++  + +++YLRRF+ L TL+L  NP  + ++Y  +  A+LP L+YL+YR IDD  +  A   +  SI+ L H E ++Q  ++E E++  + +  HK AFVE LN S LF+SM+ ED+E + L  LPGV ELL+TY++ F  +C+ +FE+GLK + KRK E+D+F + + +AIQ+N ++  + I +FE +     S +    +    EK I E S  I+ L+D LM LEMQLV+QLEE+I  FERN+ D+VG F+ENVQ L++Q R LE++HHEKL +I++ TLEK+++ +L+E++ +D+R LFVDKDTIVNAV ASHD H  +IDN+ED++VTR N+    LI+ IH DEI RNR RV EIN  +DH + E++N E
Sbjct:    1 MNQPCNSMEPRVMDDDMLKLAVGDQGPQEEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFENLRKLQLDNNIIEKIEGLENLAHLVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLDYRRIDDHTKKLAEAKHQYSIDELKHQENLMQ-AQLEDEQAQREELEKHKTAFVEHLNGSFLFDSMYAEDSEGNNLSYLPGVGELLETYKDKFVIICVNIFEYGLKQQEKRKTELDTFSECVREAIQENQEQGKRKIAKFEEKHLSSLSAIREELELPNIEKMILECSADISELFDALMTLEMQLVEQLEETINMFERNIVDMVGLFIENVQSLMAQCRDLENHHHEKLLEISISTLEKIVEGDLDEDLPNDLRALFVDKDTIVNAVGASHDIHLLKIDNREDELVTRINSWCTRLIDRIHKDEIMRNRKRVKEINQYIDHMQSELDNLE 517
The following BLAST results are available for this feature:
BLAST of TCONS_00053455-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DRC33.076e-18050.77Dynein regulatory complex subunit 3 OS=Homo sapien... [more]
back to top