Replication protein A (polypeptide) - C. hemisphaerica

Overview
NameReplication protein A
Unique NameTCONS_00053453-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053453-protein ID=TCONS_00053453-protein|Name=Replication protein A|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MNFQGFGDNYQGDGGSGGGFMSPGFGGSQTPGPDAKKSRAQSLLPVTAAI
IQKADYNATEDVFRFEGVEIHQVTFVGIIREVSEAATNISYKIDDMTGDF
ISVRKWLDDEEKTAFKRSECRENTYVRVVGNMKALSEGKLRNVMAFNITP
VVDFDEITYHFLDVVHAKLAIEKIVGGSSTAPLGGVQTPAGANADNFGGG
YNDAGLTGQNKLVFNYISACTEEQGIHFQSLKNKCRGMQEKQLRNCIEWL
SNEGHIYSTIDDDHYRSTSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033746XLOC_033746Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053453TCONS_00053453Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014646Rfa2/RPA32
IPR011991WHTH_DNA-bd_dom
IPR014892RPA_C
IPR012340NA-bd_OB-fold
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0006260DNA replication
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 38..174
e-value: 2.8E-25
score: 87.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..39
NoneNo IPR availableCDDcd04478RPA2_DBD_Dcoord: 72..169
e-value: 1.68613E-35
score: 123.093
IPR014646Replication factor A protein 2PIRSFPIRSF036949RPA32coord: 5..269
e-value: 1.4E-60
score: 203.6
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 202..270
e-value: 1.0E-21
score: 76.0
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 205..268
IPR014892Replication protein A, C-terminalPFAMPF08784RPA_Ccoord: 187..263
e-value: 3.6E-15
score: 56.4
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 44..169

Blast
[Close]
BLAST of Replication protein A vs. Swiss-Prot (Human)
Match: RFA2 (Replication protein A 32 kDa subunit OS=Homo sapiens GN=RPA2 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 3.647e-57
Identity = 100/249 (40.16%), Postives = 144/249 (57.83%), Query Frame = 0 
Query:   22 SPGFGGSQTPGPDAKKSRAQSLLPVTAAIIQKADYNATEDVFRFEGVEIHQVTFVGIIREVSEAATNISYKIDDMTGDFISVRKWLDDEEKTAFKRSECRENTYVRVVGNMKALSEGKLRNVMAFNITPVVDFDEITYHFLDVVHAKLAIEKIVGGSSTAPLGGVQTPAGANADNFGGG--YNDAGLTGQNKLVFNYISACTEEQGIHFQSLKNKCRGMQEKQLRNCIEWLSNEGHIYSTIDDDHYRST 268
            SPG  GS  P    KKSRA++   V   I Q       ++VFR   VEI QVT VGIIR   +A TNI YKIDDMT   + VR+W+D ++ T+ + +     TYV+V G++++    K  +++AF I P+ D +E T H L+V++A + + K      +A    +  P  + A NFGG       GLT     V N I AC   +G++FQ LKN+ + M    ++  +++LSNEGHIYST+DDDH++ST
Sbjct:   23 SPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDD-TSSENTVVPPETYVKVAGHLRSFQNKK--SLVAFKIMPLEDMNEFTTHILEVINAHMVLSK-ANSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKST 267
The following BLAST results are available for this feature:
BLAST of Replication protein A vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFA23.647e-5740.16Replication protein A 32 kDa subunit OS=Homo sapie... [more]
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