TCONS_00053292-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053292-protein
Unique NameTCONS_00053292-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053292-protein ID=TCONS_00053292-protein|Name=TCONS_00053292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
MDLNAAMENNSAMKSQEENPKNDIEIPKIPDIVSPRNSTTPSHNELFQKI
DELINFDRPDSENTLGSHRSSSAKSSNRDRLDSGLQSVSSDSGSPYPSPN
ITRAPLKQPPKSNAIREVAREVNDHVFRDDSDFSEWSPVSTLESNRGSRM
SISSRPKRSQSISYSPRNPKQIHYSNSDDTNVNAGGLETSGEVATIEKFL
KLTNQYLDSDGVSSISSNISLDDLAMLPNLRESLEQQRKELEEQRKKQED
FLHQLGDLLLEVVTLKEEQSTVRSKQTKALNLLKKQLDAHKKSQSKAHTD
VINKVKSLDEKLSTSLNLSSGEHQTQISPISPGLGSKGFVYPVSGLNDFR
QQEENSQRGHIIWKVSDVMKKLTRVKTGSSEGTVVSPSFQTGEYGYRMNG
WLYLNGRGKMTGKYLSLYVCVLVGDYDAILKWPIKPSYTLTLMDQNGDSH
KRHDHVKVRRVLDIAGRGANVISQYGGIPRPSDCTKALIVGFDDFISHEK
LLERRYLADDTLFIKIEANIS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033639XLOC_033639Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053292TCONS_00053292Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 224..254
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..182
IPR002083MATH/TRAF domainSMARTSM00061math_3coord: 364..501
e-value: 1.6E-6
score: 37.7
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 358..518
score: 15.942
IPR008974TRAF-likeGENE3D2.60.210.10coord: 345..521
e-value: 4.7E-27
score: 94.4
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 357..519

Blast
[Close]
BLAST of TCONS_00053292-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.827e-18
Identity = 55/173 (31.79%), Postives = 80/173 (46.24%), Query Frame = 0 
Query:  349 FRQQEENSQRGHIIWKVSDVMKKLTRVKTGSSEGTVVSPSFQTGEYGYRMNGWLYLNGRGKMTGKYLSLYVCVLVGDYDAILKWPIKPSYTLTLMDQNGDSHKRHDHVKVRRVLDIAGRGANVISQYGGIPRPSDCTKALIVGFDDFISHEKLLERRYLADDTLFIKIEANIS 521
            F+  E  S  G +IWK+ D  ++      G +      P F TG +GY+M   +YLNG G   G +LSL+  ++ G+YDA+L WP K   TL LMDQ   S +RH            G             +P+     +  G   F++   L    Y+ DDT+FIK+  + S
Sbjct:  406 FQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQP-FYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQG--SSRRH-----------LGDAFKPDPNSSSFKKPTG-EMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTS 563
The following BLAST results are available for this feature:
BLAST of TCONS_00053292-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF31.827e-1831.79TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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