TCONS_00053279-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00053279-protein
Unique Name	TCONS_00053279-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	535

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00053279-protein ID=TCONS_00053279-protein|Name=TCONS_00053279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=535bp
MNTDDDNIFGEDESSQLITTSGKQKEAEEYEKIVDSVGFGYFQWKLLFIC
GWALASDSTEVQVVSFVIPAACDLGMTSSEKGWLNGIIFVGMMIGGYVFG
GAADIKGRRYVLLWSMTINGLFGLASSFAPTFGWFLLLRMLSGIGVGAAM
PVLFSYFVEFMRKETRGRMITLFASFWMVGNIITSAIAWLLIPKVHIGGQ
LGSIYYGSWRIFVAVGSFPSLSSAVLFFFLPESPKFMMQNNQVERAKKAF
IKIFKQNNGKHSSVPACILGIETPDGNEYNKKREISISDPDMCTFCQCLC
ESLKTLQKVLHSTYDLFCKPYTSISIILLFIWITLSFGYYGLWMWFPEIF
KRIQEGRGGCGGATHHNMGANFTTFDNRTCVEKVEAETEIYFQSFLIALS
NLPGNIICYLLIDRIGRRNLLAGTMVLSAVCVFFFWFVDTKIKMLIMSCF
FSALSVCGWNALDPLALENYPTHLRSSAFGLQASVGRVAAILGNVVFGEL
VDLHCSIPLLLVAGMLALGGLSSLKLPKTEDTALT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033633	XLOC_033633	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00053279	TCONS_00053279	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR005828	MFS_sugar_transport-like
IPR005829	Sugar_transporter_CS
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0022857	transmembrane transporter activity
GO:0005215	transporter activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 387..521 e-value: 1.1E-10 score: 40.9
None	No IPR available	GENE3D	1.20.1250.20		coord: 20..260 e-value: 7.0E-34 score: 116.4 coord: 304..535 e-value: 4.1E-29 score: 100.8
IPR005828	Major facilitator, sugar transporter-like	PFAM	PF00083	Sugar_tr	coord: 61..256 e-value: 5.7E-27 score: 94.6
IPR005829	Sugar transporter, conserved site	PROSITE	PS00217	SUGAR_TRANSPORT_2	coord: 141..166
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 46..531 score: 32.263
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 47..527 e-value: 1.37243E-28 score: 114.333
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 303..355 coord: 25..257 coord: 385..527

Blast

[Close]

BLAST of TCONS_00053279-protein vs. Swiss-Prot (Human)
Match: SV2C (Synaptic vesicle glycoprotein 2C OS=Homo sapiens GN=SV2C PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.401e-64
Identity = 128/339 (37.76%), Postives = 190/339 (56.05%), Query Frame = 0

Query:   21 SGKQKEAEEYEKIVDSVGFGYFQWKLLFICGWALASDSTEVQVVSFVIPAA-CDLGMTSSEKGWLNGIIFVGMMIGGYVFGGAADIKGRRYVLLWSMTINGLFGLASSFAPTFGWFLLLRMLSGIGVGAAMPVLFSYFVEFMRKETRGRMITLFASFWMVGNIITSAIAWLLIPKVHIGGQLGSIY-YGSWRIFVAVGSFPSLSSAVLFFFLPESPKFMMQNNQVERAKKAFIKIFKQNNGKHSSVPACIL---GIETPDGNEYNKKREISISDPDMCTFCQCLCESLKTLQKVLHSTYDLFCKPYTSISIILLFIWITLSFGYYGLWMWFPEIFKRIQ 354
            + +++ A++YE I+   G G FQW L F+ G AL +D  EV VV FV+P+A  DL + +S  GWL  I+++GMM+G + +GG AD  GR+  LL  M++NG F   SSF   +G+FL  R+LSG G+G A+P +FSYF E + +E RG  ++    FWM+G I  SA+AW +IP       +GS Y + SWR+FV V + P +SS V   F+PESP+F+++  + + A    +K+    N +    P  +     I+TP          I I       + +C       L  +  +    F  P    +I L  +W TLSFGYYGL +WFP++ K +Q
Sbjct:  129 ADEEELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSGWLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLFCRLLSGFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEVGKHDEA-WMILKLIHDTNMRARGQPEKVFTVNKIKTPK----QIDELIEIESDTGTWYRRCFVRIRTELYGIWLTFMRCFNYPVRDNTIKLTIVWFTLSFGYYGLSVWFPDVIKPLQ 462

HSP 2 Score: 133.65 bits (335), Expect = 4.386e-33
Identity = 66/145 (45.52%), Postives = 95/145 (65.52%), Query Frame = 0

Query:  390 IYFQSFLIALSNLPGNIICYLLIDRIGRRNLLAGTMVLSAVCVFFFWFVDTKIKMLIMSCFFSALSVCGWNALDPLALENYPTHLRSSAFGLQASVGRVAAILGNVVFGELVDLHCSIPLLLVAGMLALGGLSSLKLPKTEDTAL 534
            IYF +FL  L+ LPGNI+  LL+DRIGR  +L G+MVLS +  FF WF  ++  M+ M C ++ L++  WN+LD + +E YPT  R++ FG   ++ + AA+LGN++FG LV +  SIP+LL + +L  GGL  L LP T    L
Sbjct:  582 IYFVNFLGTLAVLPGNIVSALLMDRIGRLTMLGGSMVLSGISCFFLWFGTSESMMIGMLCLYNGLTISAWNSLDVVTVELYPTDRRATGFGFLNALCKAAAVLGNLIFGSLVSITKSIPILLASTVLVCGGLVGLCLPDTRTQVL 726

The following BLAST results are available for this feature:

BLAST of TCONS_00053279-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00053279-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SV2C	2.401e-64	37.76	Synaptic vesicle glycoprotein 2C OS=Homo sapiens G...	[more]

You are here

TCONS_00053279-protein (polypeptide) - C. hemisphaerica