TCONS_00053170-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053170-protein
Unique NameTCONS_00053170-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length151

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053170-protein ID=TCONS_00053170-protein|Name=TCONS_00053170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
LKPSFVYKIYGAGKLFPFDELAKMADTATIRTRKFMTNRLLQRRQMIVDV
LHPGKATVSKADIREKLARMYKSTADCIVCFGFKTLFGGGKTTGFALVYD
TLDYLKKFEPKYRKQRLGLIKVEKPARKQRKERKNRAKKVRGTAKAAITK
K
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033560XLOC_033560Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053170TCONS_00053170Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001976Ribosomal_S24e
IPR018098Ribosomal_S24e_CS
IPR012678Ribosomal_L23/L15e_core_dom
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.330coord: 26..124
e-value: 6.0E-47
score: 157.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..151
IPR001976Ribosomal protein S24ePFAMPF01282Ribosomal_S24ecoord: 48..124
e-value: 1.6E-36
score: 124.0
IPR001976Ribosomal protein S24ePRODOMPD006052coord: 36..107
e-value: 9.0E-18
score: 217.0
IPR001976Ribosomal protein S24eHAMAPMF_00545Ribosomal_S24ecoord: 26..127
score: 17.886
IPR018098Ribosomal S24e conserved sitePROSITEPS00529RIBOSOMAL_S24Ecoord: 87..109
IPR012678Ribosomal protein L23/L15e core domainSUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 29..129

Blast
[Close]
BLAST of TCONS_00053170-protein vs. Swiss-Prot (Human)
Match: RS24 (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.364e-53
Identity = 90/125 (72.00%), Postives = 105/125 (84.00%), Query Frame = 0 
Query:   24 MADTATIRTRKFMTNRLLQRRQMIVDVLHPGKATVSKADIREKLARMYKSTADCIVCFGFKTLFGGGKTTGFALVYDTLDYLKKFEPKYRKQRLGLIKVEKPARKQRKERKNRAKKVRGTAKAAI 148
            M DT TIRTRKFMTNRLLQR+QM++DVLHPGKATV K +IREKLA+MYK+T D I  FGF+T FGGGKTTGF ++YD+LDY KK EPK+R  R GL + +K +RKQRKERKNR KKVRGTAKA +
Sbjct:    1 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANV 125
The following BLAST results are available for this feature:
BLAST of TCONS_00053170-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS245.364e-5372.0040S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
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