TCONS_00053094-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053094-protein
Unique NameTCONS_00053094-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053094-protein ID=TCONS_00053094-protein|Name=TCONS_00053094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MTXAPEGITFDFPKCDVRANPPAKITWKRIFWPLPAGRFTVQGDNLKISN
IQFKDEGFYVCEAENFLGKTKANIQLKIKAMEIEKSSPAFIKLKRGQVVE
IHCSAYGNSQSMSGKITRVGSSALIQEETTRTPNLISVKASFREEGTYRC
TIKNNKSGKQVEAFSRVEECHSGWTKYSGNCYVYIDQKKTWNNAESYCIS
KGGHLASIMDKGENDFVYGLTPGKKNDYWIGLTDMRSEGSFSRWSDSSIV
TYKNFANGQPNNGGHNRWYSQDCVSFLYSDAYKWNDWECSKEFAFVCKAT
M
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033536XLOC_033536Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053094TCONS_00053094Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003598Ig_sub2
IPR003599Ig_sub
IPR001304C-type_lectin-like
IPR013098Ig_I-set
IPR013783Ig-like_fold
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR007110Ig-like_dom
IPR016187CTDL_fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003598Immunoglobulin subtype 2SMARTSM00408igc2_5coord: 5..68
e-value: 4.5E-4
score: 29.5
IPR003599Immunoglobulin subtypeSMARTSM00409IG_3ccoord: 88..168
e-value: 3.3
score: 15.7
coord: 5..79
e-value: 0.15
score: 21.2
IPR001304C-type lectin-likeSMARTSM00034CLECT_2coord: 170..298
e-value: 6.6E-31
score: 118.7
IPR001304C-type lectin-likePFAMPF00059Lectin_Ccoord: 187..298
e-value: 7.8E-21
score: 74.8
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 177..298
score: 24.09
IPR013098Immunoglobulin I-setPFAMPF07679I-setcoord: 6..78
e-value: 4.2E-9
score: 36.3
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 85..162
e-value: 8.2E-7
score: 28.7
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 3..50
e-value: 6.8E-7
score: 29.2
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 51..84
e-value: 2.8E-6
score: 26.8
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 163..301
e-value: 1.3E-38
score: 131.6
IPR018378C-type lectin, conserved sitePROSITEPS00615C_TYPE_LECTIN_1coord: 273..297
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 1..79
score: 8.212
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 15..80
NoneNo IPR availableCDDcd00037CLECTcoord: 180..298
e-value: 5.63481E-33
score: 117.721
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 166..299

Blast
[Close]
BLAST of TCONS_00053094-protein vs. Swiss-Prot (Human)
Match: PGCA (Aggrecan core protein OS=Homo sapiens GN=ACAN PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.565e-21
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = 0 
Query:  168 EECHSGWTKYSGNCYVYIDQKKTWNNAESYCISKGGHLASIMDKGENDFVYGLTPGKKNDY-WIGLTDMRSEGSFSRWSDSSIVTYKNFANGQPNNGGHNRWYS--QDCVSFLYSDAYKWNDWECSKEFAFVCK 298
            E C  GW KY G+CY +   ++TW +AE  C  +  HL+SI+   E +FV         DY WIGL D   EG F RWSD   + ++N+   QP+N     +++  +DCV  ++ +  +WND  C+    F CK
Sbjct: 2203 EVCEEGWNKYQGHCYRHFPDRETWVDAERRCREQQSHLSSIVTPEEQEFV----NNNAQDYQWIGLNDRTIEGDF-RWSDGHPMQFENWRPNQPDN-----FFAAGEDCVVMIWHEKGEWNDVPCNYHLPFTCK 2326
The following BLAST results are available for this feature:
BLAST of TCONS_00053094-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGCA1.565e-2136.57Aggrecan core protein OS=Homo sapiens GN=ACAN PE=1... [more]
back to top