TCONS_00053083-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053083-protein
Unique NameTCONS_00053083-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length205

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053083-protein ID=TCONS_00053083-protein|Name=TCONS_00053083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
FKFEMERDYKTVVFGGEWNIGKSSMFIYHWYGEQNPQYIPTKVDPYNVDE
YPVGENGEILKVSFIDNEGGGEDWPRFRHFGYLMANVVVLCFSIAAPETF
ELIEEYWYPFTQKHCPTAKLFLLSTKKDLRNDEKVIRELSKADERPVTYN
QGKNMANKIGAIGYYECSTRLGEGVEEIFKASAKAAYGTIDPKPKLYRKR
KCLIM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033525XLOC_033525Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053083TCONS_00053083Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 116..129
score: 30.29
coord: 10..31
score: 23.46
coord: 164..186
score: 27.98
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 9..189
e-value: 0.0033
score: -69.7
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 6..189
e-value: 4.6E-4
score: -48.0
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 12..189
e-value: 2.1E-19
score: 80.5
NoneNo IPR availableGENE3D3.40.50.300coord: 85..190
e-value: 1.2E-22
score: 79.5
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 12..185
e-value: 4.2E-23
score: 81.6
IPR003578Small GTPase superfamily, Rho typePROSITEPS51420RHOcoord: 1..186
score: 12.132
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 11..185

Blast
[Close]
BLAST of TCONS_00053083-protein vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.690e-38
Identity = 71/197 (36.04%), Postives = 113/197 (57.36%), Query Frame = 0 
Query:   10 KTVVFGGEWNIGKSSMFIYHWYGEQNPQ-YIPTKVDPYNVDEYPVGENGEILKVSFIDNEGGGEDWPRFRHFGYLMANVVVLCFSIAAPETFELIEEYWYPFTQKHCPTAKLFLLSTKKDLRNDEKVIRELSKADERPVTYNQGKNMANKIGAIGYYECSTRLGEGVEEIFKASAKAAYGTIDPKPKLYRKRKCLIM 205
            K +V  G+   GK+ + I  +  +Q P+ Y+PT  + Y  D   +  +G+ ++++  D   G ED+ R R   Y   +V+++CFSI +P++ E I E W P  +  CP   + L+  KKDLRNDE   REL+K  + PV   +G++MAN+IGA GY ECS +  +GV E+F+ + +AA      K    +K  CL++
Sbjct:    6 KKLVIVGDGACGKTCLLIV-FSKDQFPEVYVPTVFENYVAD---IEVDGKQVELALWDT-AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGK----KKSGCLVL 193
The following BLAST results are available for this feature:
BLAST of TCONS_00053083-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOA4.690e-3836.04Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
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