TCONS_00051924-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051924-protein
Unique NameTCONS_00051924-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051924-protein ID=TCONS_00051924-protein|Name=TCONS_00051924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MEQGQTNSDLISNGWFMEKNKQWSGQAFSLEVEKVLEVKQSEFQDIMVFQ
SKNHGNVLVLDGVIQCTEFDEYCYQEMLAYLALNSHPNPEKVLIIGGGDG
GIARECAKHPKVKSVTQCEIDGDVVALSKKYLPSMASGFDSPKMNLNIGD
GFAFMEKHQNEFDVVISDTSDPVGPAERLFSENYYKLVYAALKEDGILSV
QGECMFLHANLIRNLLDFCNGLFAKAAYATSYVPTYPCGQIGYVLASKNA
HTNFKKPAIVFNEDEKEKIGFRYYDEEIHENAFVLPRAFKKILAGTNHEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032859XLOC_032859Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051924TCONS_00051924Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001045Spermi_synthase
IPR030373PABS_CS
IPR030374PABS
IPR029063SAM-dependent_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.140.10coord: 1..68
e-value: 4.4E-27
score: 93.7
NoneNo IPR availablePFAMPF17284Spermine_synt_Ncoord: 14..68
e-value: 6.0E-19
score: 67.6
NoneNo IPR availablePFAMPF01564Spermine_synthcoord: 73..255
e-value: 2.8E-61
score: 206.1
NoneNo IPR availableGENE3D3.40.50.150coord: 69..296
e-value: 3.8E-42
score: 143.9
NoneNo IPR availableCDDcd02440AdoMet_MTasescoord: 107..201
e-value: 6.04122E-4
score: 36.2539
IPR001045Spermidine/spermine synthasesTIGRFAMTIGR00417TIGR00417coord: 15..287
e-value: 1.1E-99
score: 331.1
IPR001045Spermidine/spermine synthasesHAMAPMF_00198Spermidine_synthcoord: 14..294
score: 33.673
IPR030373Polyamine biosynthesis domain, conserved sitePROSITEPS01330PABS_1coord: 92..105
IPR030374Polyamine biosynthesis domainPROSITEPS51006PABS_2coord: 13..248
score: 91.669
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 12..293

Blast
[Close]
BLAST of TCONS_00051924-protein vs. Swiss-Prot (Human)
Match: SPEE (Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 2.449e-123
Identity = 160/283 (56.54%), Postives = 210/283 (74.20%), Query Frame = 0 
Query:   11 ISNGWFMEKNKQWSGQAFSLEVEKVLEVKQSEFQDIMVFQSKNHGNVLVLDGVIQCTEFDEYCYQEMLAYLALNSHPNPEKVLIIGGGDGGIARECAKHPKVKSVTQCEIDGDVVALSKKYLPSMASGFDSPKMNLNIGDGFAFMEKHQNEFDVVISDTSDPVGPAERLFSENYYKLVYAALKEDGILSVQGECMFLHANLIRNLLDFCNGLFAKAAYATSYVPTYPCGQIGYVLASKNAHTNFKKPAIVFNEDEKEKIGFRYYDEEIHENAFVLPRAFKKIL 293
            I  GWF E    W GQA SL+VE++L  ++S +QDI+VF+SK +GNVLVLDGVIQCTE DE+ YQEM+A L L SHPNP KVLIIGGGDGG+ RE  KHP V+SV QCEID DV+ +SKK+LP MA G+ S K+ L++GDGF FM+++Q+ FDV+I+D+SDP+GPAE LF E+YY+L+  ALKEDG+L  QGEC +LH +LI+ +  FC  LF   AYA   +PTYP GQIG++L SKN  TNF++P     + +  ++  +YY+ ++H  AFVLP   +K L
Sbjct:   16 IREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNPSTNFQEPVQPLTQQQVAQMQLKYYNSDVHRAAFVLPEFARKAL 298
The following BLAST results are available for this feature:
BLAST of TCONS_00051924-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPEE2.449e-12356.54Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV... [more]
back to top