TCONS_00050510-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050510-protein
Unique NameTCONS_00050510-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050510-protein ID=TCONS_00050510-protein|Name=TCONS_00050510-protein|organism=Clytia hemisphaerica|type=polypeptide|length=454bp
MAVSKGANTYNRQNWEEADFPILCQTCLGDNPYVRMIKDKYGKECKICQR
PFTIFKWCPGAKMRYKKTEVCQTCSKLKNVCQTCLLDLEYGLPIEVRDKA
LAIQDNLPKSDVNKEFFTQNIEKELANTDGTVAAGAVGKAQASSDLLMKL
ARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEMPRAPDDPLANQNIKD
RYYGVNDPVADKMMQRAAAMPKLEKPSDKTVTTLYVGGLDDRITDKDLRD
YFYQFGEIRSINIATGKSCAFVCYTTRMAAEFAADRSFNKAIVKGKRLKV
SWGRSQEERNAGKSKEDRNSKHYAPVPGLPGALPPVSGNITDVPLPPSVG
GGASSTEQSGGSRSQRMPPPMNRPPPPPHHMFPPPHNYGPPPRGRMPGPP
PGGFPPPPSLMGPPPPQFAPRNPSDSGSRPPRTQVHYPSQDPHRMGTGTG
QVQE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031989XLOC_031989Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050510TCONS_00050510Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 233..301
e-value: 3.7E-17
score: 73.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 234..299
e-value: 3.0E-10
score: 39.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 232..305
score: 15.34
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 226..304
coord: 384..398
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 159..185
e-value: 4.7E-6
score: 36.1
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 159..186
score: 14.925
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 162..184
NoneNo IPR availableGENE3D4.10.1000.10coord: 148..190
e-value: 3.2E-6
score: 26.3
NoneNo IPR availableGENE3D3.30.70.330coord: 214..324
e-value: 3.4E-22
score: 78.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..454
NoneNo IPR availableCDDcd12224RRM_RBM22coord: 231..304
e-value: 5.84038E-41
score: 140.858

Blast
[Close]
BLAST of TCONS_00050510-protein vs. Swiss-Prot (Human)
Match: RBM22 (Pre-mRNA-splicing factor RBM22 OS=Homo sapiens GN=RBM22 PE=1 SV=1)

HSP 1 Score: 517.694 bits (1332), Expect = 0.000e+0
Identity = 259/462 (56.06%), Postives = 312/462 (67.53%), Query Frame = 0 
Query:    1 MAVSKGANTYNRQNWEEADFPILCQTCLGDNPYVRMIKDKYGKECKICQRPFTIFKWCPGAKMRYKKTEVCQTCSKLKNVCQTCLLDLEYGLPIEVRDKALAIQDNLPKSDVNKEFFTQNIEKELANTDGTVAAGAVGKAQASSDLLMKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEMPRAPDDPLANQNIKDRYYGVNDPVADKMMQRAAAMPKLEKPSDKTVTTLYVGGLDDRITDKDLRDYFYQFGEIRSINIATGKSCAFVCYTTRMAAEFAADRSFNKAIVKGKRLKVSWGRSQEERNAGKSKEDRNSKHYAPVP---------GLPGALPPVSGNITDVP--LPPSVGGGASSTEQSGGSRSQRMPPPMNRPPPPPHHMFPPPHNYGPPPRGRMPGPPPGGFPPPPSLMGPPPPQFAPRNPSDSGSRPPRTQVHYPSQDPHRMGTGTGQ 451
            MA S G+NTYNRQNWE+ADFPILCQTCLG+NPY+RM K+KYGKECKIC RPFT+F+WCPG +MR+KKTEVCQTCSKLKNVCQTCLLDLEYGLPI+VRD  L+ +D++PKSDVNKE++TQN+E+E++N+DGT   G +GKA ++SD+L+KLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHE P  PDDPLA+QNIKDRYYG+NDPVADK+++RA+ MP+L+ P DKT+TTLYVGGL D IT+ DLR++FYQFGEIR+I +   + CAF+ + TR AAE AA++SFNK IV G+RL V WGRSQ  R   K K+          P           P A    S N  ++P   PP+V   A                          HMF P                    PPPP +  P P                   +HYPSQDP RMG   G+
Sbjct:    1 MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKDGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYFNLPPSGPPAVVNIALPPPPGIAPPPPPG---------FGPHMFHPMG------------------PPPPFMRAPGP-------------------IHYPSQDPQRMGAHAGK 416
The following BLAST results are available for this feature:
BLAST of TCONS_00050510-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM220.000e+056.06Pre-mRNA-splicing factor RBM22 OS=Homo sapiens GN=... [more]
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