Nuclear receptor (polypeptide) - C. hemisphaerica

Overview
NameNuclear receptor
Unique NameTCONS_00049956-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049956-protein ID=TCONS_00049956-protein|Name=Nuclear receptor|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MEYKRQRTMATRILEPNGITTIKQEKLYEKEILTDKKPLSLCRVCGDKSS
GKHYGVYTCDGCRGFFKRAVRRNLDFRCKEKGQCQVDVARRNQCQACRWK
KCLEVKMNRDAVQHERPPRTAHTQINTSNNNNNLSPTMTPHTGDTTNLHH
NIMGAYPDPSFMANTGGQNNNAHQRNNNNFNSYNNNQNQQFHPNMYPPSH
PSNFSPPYTPDDENPDRKNGFLNITSLMQNNSNNNSTDLIDTLHNMPDDG
LDNINHESLIPNINEFPTQSIVNPEKIYESSVRILYASVSWARSIPTFIE
LPFTDQALLLEECWSELFILCMIQCSVPMDLSVLLSAAGAHAEKETSSNV
PGSVQDLGTLQHIVQRFQNLAIDATEFACLKATVLFKPDLPGIRNTQYVE
HLQDYAQSMLGEYVRTAHPNNPARFGKLLLLLPSLRSVTPKSIENLFFRS
GIDQLPIYKMLCNMFKAN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031658XLOC_031658Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049956TCONS_00049956Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001628Znf_hrmn_rcpt
IPR001723Nuclear_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0008270zinc ion binding
GO:0003707steroid hormone receptor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003707 steroid hormone receptor activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001628Zinc finger, nuclear hormone receptor-typePRINTSPR00047STROIDFINGERcoord: 42..58
score: 59.37
coord: 99..107
score: 50.12
coord: 58..73
score: 51.85
coord: 91..99
score: 58.94
IPR001628Zinc finger, nuclear hormone receptor-typeSMARTSM00399c4goldcoord: 39..110
e-value: 1.1E-30
score: 117.9
IPR001628Zinc finger, nuclear hormone receptor-typePFAMPF00105zf-C4coord: 41..109
e-value: 7.1E-28
score: 96.8
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS00031NUCLEAR_REC_DBD_1coord: 42..68
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS51030NUCLEAR_REC_DBD_2coord: 39..114
score: 19.379
IPR001723Nuclear hormone receptorPRINTSPR00398STRDHORMONERcoord: 370..385
score: 42.39
coord: 301..317
score: 43.14
coord: 103..113
score: 43.15
coord: 280..301
score: 32.32
coord: 427..444
score: 40.59
IPR000536Nuclear hormone receptor, ligand-binding domainSMARTSM00430holicoord: 279..439
e-value: 2.7E-32
score: 123.3
IPR000536Nuclear hormone receptor, ligand-binding domainPFAMPF00104Hormone_recepcoord: 265..448
e-value: 3.8E-34
score: 118.0
IPR000536Nuclear hormone receptor, ligand-binding domainSUPERFAMILY48508Nuclear receptor ligand-binding domaincoord: 108..122
coord: 201..207
coord: 236..467
NoneNo IPR availableGENE3D1.10.565.10coord: 102..468
e-value: 2.3E-71
score: 239.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..218
NoneNo IPR availableCDDcd07164NR_DBD_PNR_like_1coord: 42..119
e-value: 2.37027E-52
score: 171.878
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 40..121
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 34..101
e-value: 1.8E-30
score: 104.4

Blast
[Close]
BLAST of Nuclear receptor vs. Swiss-Prot (Human)
Match: NR2E3 (Photoreceptor-specific nuclear receptor OS=Homo sapiens GN=NR2E3 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 1.119e-73
Identity = 156/436 (35.78%), Postives = 216/436 (49.54%), Query Frame = 0 
Query:   34 TDKKPLSLCRVCGDKSSGKHYGVYTCDGCRGFFKRAVRRNLDFRCK-EKGQCQVDVARRNQCQACRWKKCLEVKMNRDAVQHERPPRTAHTQINTSNNNNNLSPTMTPHTGDTTNLHHNIMGAYPDPSFMANTGGQNNNAHQRNNNNFNSYNNNQNQQFHPNMYPPSHPSNFSPPYTPDDENPDRKNGFLNITSLMQNNSNNNSTDLIDTLHNMPDDGLDNINHESLIPNINEFPTQSI--VNPEKIYESSVRILYASVSWARSIPTFIELPFTDQALLLEECWSELFILCMIQCSVPMDLSVLLSAAGAHAEKETSSNVPGSVQDLGTLQHIVQRFQNLAIDATEFACLKATVLFKPDLPGIRNTQYVEHLQDYAQSMLGEYVRTAHPNNPARFGKLLLLLPSLRSVTPKSIENLFFRSGIDQLPIYKMLCNMFK 466
            T   P   CRVCGD SSGKHYG+Y C+GC GFFKR+VRR L +RC+   G C VD                  K +R+  Q  R  +     +N     N   P        T  +H                               +S  +N   +    + PP+ P+  SP   P   +  R  G   + SL+   +              P+D  +NI+  S  P     P  S      + I+E+S R+L+ +V WA+++P F  LPF DQ +LLEE WSELF+L  IQ S+P+D   LL+   A A       +  +  +   LQ  + RF+ LA+D TEFAC+KA VLFKP+  G+++ ++VE LQD +Q ML ++ +  HP+ P RFGKLLLLLPSLR +T + IE LFFR  I   P+ K+LC+MFK
Sbjct:   39 TGVSPSLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVD------------------KAHRNQCQACRLKKCLQAGMNQDAVQNERQPR------STAQVH------------------------------LDSMESNTESRPESLVAPPA-PAGRSP-RGPTPMSAARALGHHFMASLITAETCAKLE---------PEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFK 409
The following BLAST results are available for this feature:
BLAST of Nuclear receptor vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NR2E31.119e-7335.78Photoreceptor-specific nuclear receptor OS=Homo sa... [more]
back to top