TCONS_00048891-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048891-protein
Unique NameTCONS_00048891-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048891-protein ID=TCONS_00048891-protein|Name=TCONS_00048891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MAFMKPDEFSAFPLPYLPRGGAFPSPTAPLPSMNTFSNKRRHSENTTYEA
TLPLPPLKVPKLISSTSSLPPPPPLVTPGRGHSCTSDDCKYCSGLTNLDI
AAFYWSMIAMRGYSKAKASSSYETPYSPNLPSPVCKSSTFDLAYKPPSPS
GSLSSMDSEPLSPSSSTTSESSTSSTKDLGIKYQCQVCHKSYSHPRLLNR
HLQSHTPYKKHHCPRCRKGFNDAFDLKRHIRTHTGIKPFQCRMCEKSFTQ
RCSLEAHMTRVHNVVHKFAFRERRPKLFVCEDCGVTFPDNNKFRQHEKES
TCRPNKSN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031072XLOC_031072Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048891TCONS_00048891Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 278..298
e-value: 22.0
score: 10.2
coord: 183..205
e-value: 0.0063
score: 25.7
coord: 239..262
e-value: 0.0027
score: 27.0
coord: 211..233
e-value: 0.0026
score: 27.0
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 213..233
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 185..205
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 241..262
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 183..210
score: 11.489
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 278..307
score: 8.621
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 239..262
score: 11.094
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 211..238
score: 13.962
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 205..257
NoneNo IPR availableGENE3D3.30.160.60coord: 164..196
e-value: 1.6E-4
score: 21.0
NoneNo IPR availableGENE3D3.30.160.60coord: 234..251
e-value: 7.5E-10
score: 38.3
NoneNo IPR availableGENE3D3.30.160.60coord: 252..301
e-value: 5.0E-11
score: 42.3
NoneNo IPR availableGENE3D3.30.160.60coord: 197..217
e-value: 2.5E-10
score: 40.1
NoneNo IPR availableGENE3D3.30.160.60coord: 218..233
e-value: 2.6E-9
score: 36.6
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 239..262
e-value: 3.3E-4
score: 20.8
coord: 183..205
e-value: 4.2E-4
score: 20.5
coord: 278..297
e-value: 0.016
score: 15.5
coord: 211..233
e-value: 9.1E-4
score: 19.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..175

Blast
[Close]
BLAST of TCONS_00048891-protein vs. Swiss-Prot (Human)
Match: OVOL1 (Putative transcription factor Ovo-like 1 OS=Homo sapiens GN=OVOL1 PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.671e-44
Identity = 62/120 (51.67%), Postives = 89/120 (74.17%), Query Frame = 0 
Query:  180 GIKYQCQVCHKSYSHPRLLNRHLQSHTPYKKHHCPRCRKGFNDAFDLKRHIRTHTGIKPFQCRMCEKSFTQRCSLEAHMTRVHNVVHKFAFRERRPKLFVCEDCGVTFPDNNKFRQHEKE 299
            G  + C+VC K++++ R+LNRH++ H   K+H C  C KGFND FDLKRH+RTHTG++P++C +C+K+FTQRCSLE+H+ ++H V  K+A++ERR KL+VCE+CG T         H KE
Sbjct:  115 GDLFTCRVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKCSLCDKAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKE 234
The following BLAST results are available for this feature:
BLAST of TCONS_00048891-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OVOL12.671e-4451.67Putative transcription factor Ovo-like 1 OS=Homo s... [more]
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