TCONS_00048363-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048363-protein
Unique NameTCONS_00048363-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length992

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048363-protein ID=TCONS_00048363-protein|Name=TCONS_00048363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=992bp
MADSTTKNDLTEHQEELLEASETRDTIEESHSGEETDRDRPINSYASMIY
FKEKPSKHYSIKEEPSSPEDEWKPLDDAAAKSKESKKNIQKPDEMPNTAI
VNPLRSMSSSGSPLSYTTNTESVSRTQSKATHTPKSPSTSGLPQKPLTPY
MSYRNMIFEEIKHKYPGCSPYDLACLISSKWSMLTDSERKVWEDQYEVEM
RKYNERIVVKLPLPKSNATKIDWNTESATESSTSPTQIGKTGIVASTSTT
ASNTTTDENKSSPQVGNCKLCQRCTTLQDFSSVIDGHEIYCSGLCSEKCY
MEAAKQIHNFESGSTSKGRYGRSSTSQESSSASSHLSTSSTSSYSNTTNN
APDLIRHSKSSSLFDWEQYLSVDPQSSIAHWMFFRQARSPHVNSFVAGMK
LEACSYNASNMSPTFSLATVIATVGSRILLHFDGADPSSDIWRLPDSGDI
HPVGWTEGSLLKAPMGYKYDPSKYNKYFATSLQSAEIAPARFFKKEPKKP
MENYFTVGMKMEAVDKSKPSYIGVATVVDVEGEQIKIAFDGYKELGYWCH
YYDRDLFPAGWCARSGHPLRPPSNKVNPIYQRESRSSPPPSMASIGPKSP
LIQPTLLPSQSQPQAPQPPQSRDQARDHATSSSTSSWKDKSASPNSVEVF
LNLECYCGPYIELNKLKSMQRIYNGNMVTVLKNVLEDVIRCAIDPKTVFG
FLKPGRGNCVIKAICDGVTYQCCLNSIDRVSTFWRVLEQFSDNLRCCPNI
FSSTESRLPCTRCNNNRVRSLSSVHEYHRAIQSHSRKAYGTHSSYSSHSN
RNDSYSRSESTSRTEHSPNISYSMSSYDFGGRRDSECDSPNATSSSRKDS
VFEPPLLTTVQKPINESSHTEKHETLSSVKRRKERTLTSVVSTDDTFEPK
PKTKRLVKLQVDGIDIKSAPKTWTIDDVMVFIGQTDLKDYVNNFKENEID
GKALLLLQRDLVLSHMGFKLGPAVKLLGMIEELKIVQENFMN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030770XLOC_030770Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048363TCONS_00048363Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004092Mbt
IPR009071HMG_box_dom
IPR001660SAM
IPR021987SLED
IPR013761SAM/pointed
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 10..30
NoneNo IPR availableGENE3D2.30.30.140coord: 358..476
e-value: 1.5E-23
score: 82.8
NoneNo IPR availableGENE3D1.10.150.50coord: 914..992
e-value: 1.1E-15
score: 57.0
NoneNo IPR availableGENE3D2.30.30.140coord: 477..578
e-value: 1.7E-26
score: 92.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 312..351
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..264
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 572..642
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 784..883
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 143..207
e-value: 4.41133E-12
score: 62.2601
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 383..497
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 475..573
IPR004092Mbt repeatSMARTSM00561l3mbt_4coord: 472..572
e-value: 8.8E-33
score: 124.9
coord: 364..464
e-value: 9.4E-14
score: 61.7
IPR004092Mbt repeatPFAMPF02820MBTcoord: 399..467
e-value: 2.8E-12
score: 46.7
coord: 509..574
e-value: 4.7E-20
score: 71.6
IPR004092Mbt repeatPROSITEPS51079MBTcoord: 472..572
score: 30.641
IPR004092Mbt repeatPROSITEPS51079MBTcoord: 364..466
score: 23.204
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 142..205
e-value: 2.6E-6
score: 36.9
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 143..205
e-value: 1.1E-8
score: 35.2
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 133..232
e-value: 2.7E-12
score: 46.4
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 143..211
score: 10.617
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 138..206
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 920..986
e-value: 5.2E-7
score: 39.3
IPR001660Sterile alpha motif domainPFAMPF00536SAM_1coord: 922..984
e-value: 5.4E-10
score: 39.5
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 923..986
score: 9.273
IPR021987SLED domainPFAMPF12140SLEDcoord: 647..753
e-value: 2.2E-21
score: 76.3
IPR013761Sterile alpha motif/pointed domainSUPERFAMILY47769SAM/Pointed domaincoord: 919..987

Blast
[Close]
BLAST of TCONS_00048363-protein vs. Swiss-Prot (Human)
Match: SCMH1 (Polycomb protein SCMH1 OS=Homo sapiens GN=SCMH1 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 5.477e-75
Identity = 203/685 (29.64%), Postives = 327/685 (47.74%), Query Frame = 0 
Query:  364 FDWEQYLSVDPQSSIAHWMFFRQARSPHVNSFVAGMKLEACSYNASNMSPTFSLATVIATVGSRILLHFDGADPSSDIWRLPDSGDIHPVGWTE--GSLLKAPMGYKYDPSKYNKYFATSLQSAEIAPARFFKKEPKKPMENYFTVGMKMEAVDKSKPSYIGVATVVDVEGEQIKIAFDGYK-ELGYWCHYYDRDLFPAGWCARSGHPLRPPSNKV----NPI---------------------YQRESRSSPPPSMASIGPKSPLIQPTLLPSQSQ-----PQAPQP-PQSRDQARDH-----ATSSSTSSWKDKSASPN-------------SVEVFLNLECYCGPYIELNKLKSMQRIYN-GNMVTVLKNVLEDVIRCAIDPKTVFGFLKPGRGNCVIKAICDGVTYQCCLNSIDRVSTFWRVLEQFSDNLRCCPNIFSSTESRLPCTRCNNNRVRSLSSVHEYHRAIQSHSRKAYGTHSSYSSHSNRNDSYSRSESTSRT--EHSPNISYSMSSYDFGGRRDSECDSPNATSSSRKDSVFEPPLLTTVQKPINESSHTEKHETLSSVKRRKER-------TLTSVVSTDDTFEPKPKTKRLVKLQVDGIDIKSAPKTWTIDDVMVFIGQTD--LKDYVNNFKENEIDGKALLLLQRDLVLSHMGFKLGPAVKLLGMIEELK 984
            F W++YL  +  S  A    F+Q+ +P  N F   MKLEA   +  N + T  +ATV+   G+R+ L  DG+D  +D WRL DS +I P+G  E  G +L+ P+G++ + S +  +   +L  AE+AP R F KEP  P  N+F +GMK+EAVD+  P +I  AT+ +V G ++ + FDG++    YWC +  RD+FP GWC+ +G  L+PP  KV    NP                      +Q   R   P       PK+ +  P   PS++      P+   P P S+ + R       A+ ++++   D S  P              +V ++LN     GP+++  K++ +   +       VL+  ++  I CA   KTVF FLK G G  VI A+ D   +   L +++ ++   R LE+   NLR   N+F +     P T+ +     SL+++   H    SH R   G            +++    S +R+   HS ++             DS  +  N  S+S++      PLL++   P + +S   +  +   +K   ER        L     +D   E +  ++      + G D    P +WT++DVM F+ + D  L  + + F+++EIDGKALLLL+ D+++ +MG KLGPA+KL   I+ LK
Sbjct:   28 FTWDKYLK-ETCSVPAPVHCFKQSYTPPSNEFKISMKLEA--QDPRNTTST-CIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFDGWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPYPASDVNTEKPSIHSSTKTVLEHQPGQRGRKPGKKRGRTPKTLISHPISAPSKTAEPLKFPKKRGPKPGSKRKPRTLLNPPPASPTTSTPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKNGSTGPHLDKKKVQQLPDHFGPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLR-SDNLFGNQ----PFTQTH----LSLTAIEYSH----SHDRYLPG------------ETFVLGNSLARSLEPHSDSM-------------DSASNPTNLVSTSQRHR----PLLSSCGLPPSTASAVRRLCSRGVLKGSNERRDMESFWKLNRSPGSDRYLESRDASR------LSGRD----PSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPALKLSYHIDRLK 656
The following BLAST results are available for this feature:
BLAST of TCONS_00048363-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCMH15.477e-7529.64Polycomb protein SCMH1 OS=Homo sapiens GN=SCMH1 PE... [more]
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