TCONS_00048295-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048295-protein
Unique NameTCONS_00048295-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048295-protein ID=TCONS_00048295-protein|Name=TCONS_00048295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=552bp
MKFPIAIFLMGATLVQGLLHISKCNPQSYVKVGCFKDNIVPKRALTTQLL
NRMDPHSKKGDGQLIDLNNYGQSLKELVCRCSQLAKAKGFEYFAIQFYGE
CWAGHPKDATRHGISKGGCVDARLKDGSCGPRSTECAGKCGENFVYRVAK
PVDGGWSSWGKYGACVGRCGSKGVQRRYRTCSKPRPVDGGKPCVGPRFST
KTCQKAACPGKWQNWSSWTQCVQTRQRRCTVNGKPAPQSQCGGNPTERRT
CQKCQGNWGGWGVWSDCGTPNKPCGTGSRVRRRVCLPFPGFHCPGKSEER
ISCQHQCKKTWTAWGVWGRCSKSCGGGIRIRARKCVAVGTNIVVSGCPGV
SSQQGACNTQVCPIWIWGPWSRCSRTCGSGSQNRAQICVVPGTSPPKGTT
GCSGKGKVESKSCLIRGCPVWTQWGSWSPCPKCRPSGTPAPKRIRQRRCV
YEGSNINAAGCQGARIEFQNCITLNCGPLPCSVKCLPTDIEGKVCVRNNA
GREWTMANECAFKRLRCSMPGLTMRHGKCLTLPGGGLGPIGPGGPIPVGP
AQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030739XLOC_030739Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048295TCONS_00048295Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 258..308
e-value: 3.6E-5
score: 33.2
coord: 156..209
e-value: 2.5E-6
score: 37.0
coord: 311..363
e-value: 3.3E-10
score: 49.9
coord: 212..255
e-value: 1.5
score: 7.8
coord: 364..419
e-value: 5.4E-5
score: 32.6
coord: 421..477
e-value: 0.14
score: 17.0
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 423..473
e-value: 0.11
score: 12.6
coord: 313..362
e-value: 2.7E-6
score: 27.4
coord: 367..418
e-value: 6.8E-6
score: 26.1
coord: 157..208
e-value: 6.8E-6
score: 26.1
coord: 260..306
e-value: 1.9E-4
score: 21.5
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 364..419
e-value: 1.3E-9
score: 37.8
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 209..254
e-value: 0.019
score: 14.7
coord: 308..362
e-value: 7.8E-12
score: 44.8
coord: 152..208
e-value: 1.0E-11
score: 44.4
coord: 255..307
e-value: 5.7E-7
score: 29.3
coord: 420..476
e-value: 5.7E-5
score: 22.8
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 308..363
score: 11.626
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 365..419
score: 10.24
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 153..209
score: 11.255
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 421..477
score: 8.545
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 255..304
score: 9.943
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 309..362
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 151..208
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 362..418
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 418..472
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 255..304

Blast
BLAST of TCONS_00048295-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.528e-36
Identity = 110/311 (35.37%), Postives = 133/311 (42.77%), Query Frame = 0
Query:  152 VDGGWSSWGKYGACVGRCGSKGVQRRYRTCSKPRPVDGGKPCVGPRFSTKTCQKAACP--GKWQNWSSWTQCV-------QTRQRRCTVNGKPAPQSQCGGNPTERRTCQKCQGN------WGGWGVWSDCGTPNKPCGTGSRVRRRVC-LPFPGF---HCPGKSEERISCQHQ---CKKTWTAWGVWGRCSKSCGGGIRIRARKCVAVGTNIVVSGCPGVSSQQGACNTQVCPIW-IWGPWS---RCSRTCGSGSQNRAQICVVPGTSPPKGTTGCSGKGKVESKSCLIRGCPVWTQWGSWSPCPKCRPS 436
            V GG+S W  + AC   CG KG+Q+R R C++P P +GGKPC G     + CQ   CP  G W  WS W +C        QTR R C       P  Q GG P E    +    N       G W  W   GT ++ CG G++ R R+C  P P F   +C G   +   C  +       W  W  W  CS SCGGG R R R C           C G   Q   CN+  CP    W PWS    CSRTC  G   R + C  P   P  G   C G    + + C    CPV   WGSW    +C  S
Sbjct: 4528 VHGGFSQWSAWRACSVTCG-KGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCN-----NPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNP--PPSNGGRACGGPDS-QIQRCNTDMCPVDGSWGSWHSWSQCSAS 4829          

HSP 2 Score: 124.02 bits (310), Expect = 1.779e-29
Identity = 101/296 (34.12%), Postives = 125/296 (42.23%), Query Frame = 0
Query:  151 PVDGGWSSWGKYGACVGRCGSKGVQRRYRTCSKPRPVDGGKPCVGPRFSTKTCQKAACP--GKWQNWSSWTQC-------VQTRQRRCTVNGKPAPQ---SQCGGNPTERRTCQK----CQGNWGGWGVWSDCGTPNKPCGTGSRVRRRVCL-PFPGF---HCPGKSEERISCQHQ---CKKTWTAWGVWGRCSKSCGGGIRIRARKCVAVGTNIVVSGCPGVSSQQGACNTQVCPI---W-IWGPWSRCSRTCGSGSQNRAQICVVPGTSPPKGTTGCSGKGKVESKSCLIRGCP 419
            PVDG WS W  +  C   CG +G Q R RTC+ P    GG+PC G       C    CP  G W  W  W  C        QTR R C     P P    S C G  T+ + C +      G W  W  WS C      CG G+R R R C  P P +    C G   +   C          W+ W  WG CS++C GG   R R C     +     C G  SQ   CNT +CP+   W  W  WS+CS +CG G + R ++C  P   P KG   C G    +   C ++ CP
Sbjct: 4584 PVDGSWSEWSLWEECTRSCG-RGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLC---NNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSV---SCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHP--VPVKGGRPCPGD-TTQVTRCNVQACP 4869          
The following BLAST results are available for this feature:
BLAST of TCONS_00048295-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN13.528e-3635.37Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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