TCONS_00047075-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047075-protein
Unique Name	TCONS_00047075-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	782

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047075-protein ID=TCONS_00047075-protein|Name=TCONS_00047075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=782bp
MNVLADTEIAIQTFYHSQVEEQRNEAHRWLLELQKSPQAWQVSLLLLDAT
KPTECQYYGAVILHYKICHMMTEVGEKEVQDLKNKLVLLISSACSGAKFV
RTKLCSIFAVLVLQTMQESETLLTCITQVSSHFQNVSPQQSKEVILQILI
EFPSQFKNLNMDSSKRLKARDFMVQFAEPLLSMWNEILAGHYPSDETCSR
LTLTFWYHLQDDLVDVTVTDFQKQFQDAFLMLVDVYFVKGQYPPDEVYNK
YTSEEKELFRCYRIDIQDTIMYLHHTLRDRCLSYFIEKLSSLLSSGQSTW
QQYESVLYLLSGTTGTIDSEDKVYMPNIIQLLKKVPNHPKIHDTLYTFLG
GLGEWLIYNQNHIEDLLPFLLSGMNESNNQIMSSCSLSLQDICQECAQLL
SRQSVMKVLQVCRDTLQRPNCPAKVCVRLFQVAGYVISVLPASEIRNELE
IMVAPLLHNFKSLLGSKAQGPEVVEQICHCLNCLTAMFRSLDPFEEQAVH
PISIVYEQLLQILPLIKGYCTEEIIMLAATGCVSKAVEIVREKLAPFVNA
TCQLLFDCFSACPMWCIMNTASLVIGMFGSEEITSQAIKEFFVAITTSCL
TLNSTDNTDSMQGLMEMMTKVIRTVPEFFFEGTEFQEVLVKRALELMTLQ
ETPTIKSTCHFVVTYLGVVSVYDTGKEVFLRCGKDIIGRVLLCIGVTAPR
SLLDNYSDVLLAINKNFSTESSVWLNELLLTENFPTAVPTQQQKELFRKM
VIKERSSKNRLRETVRNFALLCRGLMGLTYVQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030011	XLOC_030011	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047075	TCONS_00047075	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 4..771 e-value: 1.2E-39 score: 135.7
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 1..669

Blast

[Close]

BLAST of TCONS_00047075-protein vs. Swiss-Prot (Human)
Match: IPO13 (Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3)

HSP 1 Score: 282.337 bits (721), Expect = 3.113e-82
Identity = 178/618 (28.80%), Postives = 310/618 (50.16%), Query Frame = 0

Query:  188 LAGHYPSDETCSRLTLTFWYHLQDDLVDVTVTD---FQKQFQDAFLMLVDVYFVKGQYPPDEVYNKYTSEEKELFRCYRIDIQDTIMYLHHTLRDRCLSYFIEKLSSLLSSGQS--TWQQYESVLYLLSGTTGTIDSEDKVYMPNIIQLLKKVP-NHPKIHDTLYTFLGGLGEWLIYNQNHIEDLLPFLLSGMNESNNQIMSSCSLSLQDICQECAQLLSRQSVMKVLQVCRDTLQRPNCPAKVCVRLFQVAGYVISVLPASEIRNELEIMVAPLLHNFKSLLGSKAQGPEVVEQICHCLNCLTAMFRSLDPFEEQAVH--------PIS--------IVYEQLLQILPLIKGYCTEEIIMLAATGCVSKAVEIVREKLAPFVNATCQLLFDCFSACPMWCIMNTASLVIGMFGSEEITSQAIKEFFVAITTSCLTL---NSTDNTDSMQGLMEMMTKVIRTVPEFFFEGTEFQEVLVKRALELMTLQETPTIKSTCHFVVTYLGVVSVYDTGKEVFLRCGKDIIGRVLLCIGVTAPRSLLDNYSDVLLAINKNFSTESSVWLNELLLTENFPTAVPTQQQKELFRKMVIKERSSKNRLRETVRNFALLCRGLMGLTY 780
            + GHYP +ET S LTLTFWY LQDD++         +Q+ ++  +  LVDV   K Q+P DE Y  ++S+EKE FR YR+DI DT+MY++  L    LS   +KL  LL+S +   +WQ  E++LY       TID      +P +I L+ ++  ++ ++ DT+   +G L EWL  +   I  +LP +L  +   N ++  S   +L+ IC+EC   L   +   ++ V +D L +       C+ L Q  G+++S L   EI   L  +++P +   + L   +   P     I H L  L+ +F +LD    +  H        P+         ++ +    I  ++  +  +  ++ A      K+V+ + +  AP V   C++L   +S  P    ++    ++ +F  E      I+  F+ +T+  LTL      D+ D +   M+++ + ++  P+ F       + + + A+  +   E PT+K++C F    L      ++  +V    G+ ++  VL  IG  A RSL+D ++D+L A+NK+  +  S+W+ E L    FP+A  + +QK+ F + +++ER +K R++E V+ F LLCRGL G  Y
Sbjct:  346 IPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALG--NPELSVSSVSTLKKICRECKYDLPPYAA-NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKL-AEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRERVNKRRVKEMVKEFTLLCRGLHGTDY 959

The following BLAST results are available for this feature:

BLAST of TCONS_00047075-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047075-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IPO13	3.113e-82	28.80	Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3	[more]

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TCONS_00047075-protein (polypeptide) - C. hemisphaerica