TCONS_00046823-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046823-protein
Unique NameTCONS_00046823-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length766

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046823-protein ID=TCONS_00046823-protein|Name=TCONS_00046823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=766bp
MADRRKLQGEVDRCLKKVSEGCELFEDIWKKVQNATNVNQKEKYESELKK
EIKKLQRLREQIKTWLTSSDIKDKKSLLDNRKLIELQMERFRIVEKETKT
KAYSKEGLGQANKVDPETKEKERCREWLNESINTLGIQIDQMECEIESIN
AGTKKKKLDKDKVERIENLNERIEKHRFHTTQLEHILRLLDNETIEVESV
NKIREDIEYYVENNQDQDIDEMELEGIYEDLDLDTLIGAEIIKNPEDNDD
DSIQSSPSSSLTSSHFHHSMNSPAKSNTVTVSPRKNSKSSSSSVPTTPSL
SNGISSSGTSSSTTKDVPSTTSSSHTPSKRNLFSSTSSSTTTSSSSNTST
SSSTVTTSSTTSSSSTTPSLSSSSSTDSDYTVSVAATSVPLVNGFDHPSN
SESPSTTTTSISTTLPTEDDSPSIQSSTNQTAVSSSSSSSSDNTDVTVSS
VTGTTSSLPTEEETAVQAVRNHVESLKHPGYNSNSSIWRGSSASTTAPDT
TSLPSSQPAPPSTATETNVVTATETATATAETSSLLAGTQLGTTLPTTSQ
PNPLPYPSTKMDDPLSQNNTDFAAGLKTSSLFGSVMNHTGSIGQKLSTSD
TQEVRLQPVHGVAPLGPVLLSQERVKQLKMLDTAYHHLPQRQDSERMRPY
ISRSAVPIAPYHHHPAPPNIDSLEFFQRLSTETLFFIFYYQEGTRAQYLA
AKALKKQSWRFHTKYMMWFQRHEEPKRITDEYEEGTYIFFDYEKWSQRKR
DGFTFEYRYLEDKDLP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029871XLOC_029871Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046823TCONS_00046823Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012270CCR4-NOT_su3/5
IPR007282NOT
IPR007207Not_N
Vocabulary: Cellular Component
TermDefinition
GO:0030015CCR4-NOT core complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0030015 CCR4-NOT core complex
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 38..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..379
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 392..568
IPR012270CCR4-NOT complex, subunit 3/ 5PIRSFPIRSF005290NOT_su_3_5coord: 577..766
e-value: 1.6E-71
score: 239.8
coord: 1..580
e-value: 9.2E-132
score: 439.0
IPR007282NOT2/NOT3/NOT5PFAMPF04153NOT2_3_5coord: 635..760
e-value: 5.8E-38
score: 129.9
IPR007207CCR4-Not complex component, Not N-terminal domainPFAMPF04065Not3coord: 4..234
e-value: 6.5E-87
score: 290.7

Blast
[Close]
BLAST of TCONS_00046823-protein vs. Swiss-Prot (Human)
Match: CNOT3 (CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 6.743e-78
Identity = 111/155 (71.61%), Postives = 132/155 (85.16%), Query Frame = 0 
Query:  611 GVAPLGPVLLSQERVKQLKMLDTAYHHLPQRQDSERMRPYISRSAVPIAPYHHHPAPPNIDSLEFFQRLSTETLFFIFYYQEGTRAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKRITDEYEEGTYIFFDYEKWSQRKRDGFTFEYRYLEDKDL 765
            GV PLGPV L++E++ Q  M + A+HH+P   DSER+R Y+ R+  P  PYHH   PP+ D++EF+QRLSTETLFFIFYY EGT+AQYLAAKALKKQSWRFHTKYMMWFQRHEEPK ITDE+E+GTYI+FDYEKW QRK++GFTFEYRYLED+DL
Sbjct:  598 GVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 752
The following BLAST results are available for this feature:
BLAST of TCONS_00046823-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNOT36.743e-7871.61CCR4-NOT transcription complex subunit 3 OS=Homo s... [more]
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