TCONS_00046627-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00046627-protein
Unique Name	TCONS_00046627-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1771

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00046627-protein ID=TCONS_00046627-protein|Name=TCONS_00046627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1771bp
MEQDDLTSNSGSSSESNSDDDDIVEETEETEEIIESSSESEEEITDVSQE
SQQEDAGDEKPQHPTTNNNQTGSSSSSSSSGESGSSSSGSSSESNDEDTE
RKPQRRNSNKEKDSKPWEENPDVYGIRRSNRQRKETNQHAIQSSESDEES
DESTKKSKRRRKRNDSWVPTLTDSDSAESDSSFEVPQRKNRKNQRNATRG
KRTQKSQKTRNISASSDDYGRKSKGRAKKTYSGPKRNAASTVSYKENSDE
QTDSDDLIEQDENATQQAQLPEEDVETIEKVVRHRKGWPGQTGAQTTIYA
DDAEEIAKLGDPDPSKDETELHYLIKWKNWSHLHSTWETKDGLIAQRVKG
LKKLDNYIKRMEEIDRWKRHSTPEDVEYFEMQQEMNEDIQKQFQKVERII
AHKFTADSSSGYPDYLCKWHGLPYFECTWEDGALTAKYFQKFIDDYLERE
RSDTIPNRNAKCLRQRPKFASFKTQPDFIGSEELRLRDYQVDGVNWLVHA
WCRDTSVILADEMGLGKTIQTISFLNYLFHKYSLYGPFLVVVPLSTMDAW
QREFVKWGPAMNIIVYLGDVNSRTTIQEYEWCFKKNRKLKFNVLLTTYEM
LLRDKELLGSLNWAALMIDEAHRLKNEDSLLYRMLINFKTNFRTLITGTP
LQNSLKELWSLLHFLMPNKFDDWSEFESQYSVSDKEGLQKLHRDLEPFLL
RRVKKDVEKSLPAKVEQILRVEMSQVQKQYYKMILTRNVQELCRELKGAF
SGLLNIVVELKKCCNHASLIKPMDQETIDPNILQTLIIGSGKMILLDKLL
CRLKETGHRVLIFSQMVRMLDIIADYLVMKRFPYQRLDGSIRGELRKRAL
DHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMAR
AHRIGQKNQVNIYRFVTKNTIEENIIERAKKKMVLDHLIIQRMDTTGRRI
LSKSNAPSSNPFNKEELSSILKFGAEDLFKEHDQDHDQKLHAMDIDDILQ
RAEMQETQEDNSVNEDLLSQFKVVNYAAFNEEEIKAAPASSATPIEKLWE
EIIPAEERLKVEEEKIEEMKLKPRSRKAVEKMGTTLSNETSSSKRVKSKE
FIEDDFSTSSSDEDAKETTAGAKKASRKQKPLKKEGVKGFTDAEIRRFIK
SYKKFARPVTRLDAISEDAELTDKSTSELKELSELLKSSCEQTVKEYEEK
LLQDEQFDGKKKGASLKISGVTVNAHSVMKAERDLEPLATCLPEDEKQLK
GFRLTIPTRSVHWGLPWGNIEDSMLLVGMLMYGIGNWDTIKNDQTLKLTN
KILPTGKGKPQEKQLMSRGEYLLRLLRESQTDNPKQKKIKLKIKTSSIKS
ESKASSDHKKQDVSDEKPATVTLEEKPKKEKKKKSEKSEKKKKNEKSSSA
SNKTKDKGGSEENEITVKEIGELDDATFKSCKEKMRAEKKSLQQLHQPDQ
ESSEQAQLQATKKCLLKIGDHIEKTLTTEFQHDQPLAENWRSKLWTFVSK
FTELGASKLFKLYRTACRKRDSHKKEIQKMKANHTSTLQEVGKTVISTDR
VELEEARKKALGLDAKSAPKKIPKIKHKNENKIKTKESWDPRRDYKHFGS
KGTSSTDQLKNNRNPSPMTGGSDKTQYNNNDNKTESKNNEGGGGKALTYR
EWKEQQQKRNEEKAPSKHERPFKERKYADYDEKPAQHNKYYEAPRRPKYA
RDFAPMHENSPRTSQSPSYYGGYDRNERGYQQQQSYPRKRTISNNSDSTN
SSDVKKFKEYEQVSPEPGEIT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029768	XLOC_029768	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00046627	TCONS_00046627	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000953	Chromo/chromo_shadow_dom
IPR001650	Helicase_C
IPR025260	DUF4208
IPR014001	Helicase_ATP-bd
IPR000330	SNF2_N
IPR023780	Chromo_domain
IPR023779	Chromodomain_CS
IPR002464	DNA/RNA_helicase_DEAH_CS
IPR027417	P-loop_NTPase
IPR016197	Chromodomain-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1513..1533
None	No IPR available	GENE3D	3.40.50.300		coord: 782..943 e-value: 1.1E-36 score: 125.2
None	No IPR available	GENE3D	3.40.50.10810		coord: 487..703 e-value: 2.2E-52 score: 177.1
None	No IPR available	GENE3D	2.40.50.40		coord: 245..360 e-value: 2.4E-15 score: 55.7 coord: 372..449 e-value: 2.4E-13 score: 49.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1564..1771
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1326..1418
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1070..1136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..255
None	No IPR available	CDD	cd00024	CHROMO	coord: 305..360 e-value: 2.23684E-7 score: 49.1847
None	No IPR available	CDD	cd00079	HELICc	coord: 781..913 e-value: 5.27486E-30 score: 116.954
None	No IPR available	CDD	cd00024	CHROMO	coord: 395..449 e-value: 1.86441E-6 score: 46.4883
None	No IPR available	CDD	cd00046	DEXDc	coord: 506..650 e-value: 1.15069E-22 score: 96.2524
IPR000953	Chromo/chromo shadow domain	SMART	SM00298	chromo_7	coord: 392..451 e-value: 3.4E-10 score: 49.9 coord: 26..362 e-value: 0.0013 score: 28.0
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 394..458 score: 12.069
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 301..369 score: 11.435
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 821..905 e-value: 1.1E-23 score: 94.7
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 795..905 e-value: 4.1E-19 score: 68.9
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 795..946 score: 19.995
IPR025260	Domain of unknown function DUF4208	SMART	SM01176	DUF4208_2	coord: 1410..1516 e-value: 1.7E-34 score: 130.6
IPR025260	Domain of unknown function DUF4208	PFAM	PF13907	DUF4208	coord: 1425..1514 e-value: 1.5E-19 score: 70.1
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 482..677 e-value: 4.7E-31 score: 119.2
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 498..668 score: 23.096
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 499..769 e-value: 2.1E-64 score: 217.3
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 315..346 e-value: 5.4E-8 score: 32.5 coord: 394..449 e-value: 1.4E-15 score: 56.8
IPR023779	Chromo domain, conserved site	PROSITE	PS00598	CHROMO_1	coord: 415..434
IPR023779	Chromo domain, conserved site	PROSITE	PS00598	CHROMO_1	coord: 323..343
IPR002464	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	PROSITE	PS00690	DEAH_ATP_HELICASE	coord: 614..623
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 436..702
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 704..991
IPR016197	Chromo domain-like	SUPERFAMILY	54160	Chromo domain-like	coord: 267..287 coord: 318..369
IPR016197	Chromo domain-like	SUPERFAMILY	54160	Chromo domain-like	coord: 372..449

Blast

[Close]

BLAST of TCONS_00046627-protein vs. Swiss-Prot (Human)
Match: CHD1 (Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2)

HSP 1 Score: 1273.84 bits (3295), Expect = 0.000e+0
Identity = 702/1367 (51.35%), Postives = 931/1367 (68.11%), Query Frame = 0

Query:  178 ESDSSFEVPQRKNRKNQRNATRGKRTQK--SQKTRNISASSDDYGRKSKGRAKKTYSGPKRNAASTVSYKENSDEQTDSDDLIEQDENATQQAQLPEEDVETIEKVVRHRKGWPGQTGAQTTIYADDAEEIAKLGDPDP----SKDETELHYLIKWKNWSHLHSTWETKDGLIAQRVKGLKKLDNYIKRMEEIDRWKRHSTPEDVEYFEMQQEMNEDIQKQFQKVERIIAHKFTADSSSGYPDYLCKWHGLPYFECTWEDGALTAKYFQKFIDDYLERERSDTIPNRNAKCLRQRPKFASFKTQPDFIGSEE-LRLRDYQVDGVNWLVHAWCRDTSVILADEMGLGKTIQTISFLNYLFHKYSLYGPFLVVVPLSTMDAWQREFVKWGPAMNIIVYLGDVNSRTTIQEYEWCFKKNRKLKFNVLLTTYEMLLRDKELLGSLNWAALMIDEAHRLKNEDSLLYRMLINFKTNFRTLITGTPLQNSLKELWSLLHFLMPNKFDDWSEFESQYSVSDKEGLQKLHRDLEPFLLRRVKKDVEKSLPAKVEQILRVEMSQVQKQYYKMILTRNVQELCRELKGAFSGLLNIVVELKKCCNHASLIKPMDQETI--DPNILQTLIIGSGKMILLDKLLCRLKETGHRVLIFSQMVRMLDIIADYLVMKRFPYQRLDGSIRGELRKRALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMARAHRIGQKNQVNIYRFVTKNTIEENIIERAKKKMVLDHLIIQRMDTTGRRILSKSNAPSSN-PFNKEELSSILKFGAEDLFKEHDQDHDQKLHAMDIDDILQRAEMQETQEDN-SVNEDLLSQFKVVNYAAFNEEEIKAAPASSATPIEKLWEEIIP----AEERLKVEEEKIEEMKLKPRSRKAVEKMGTTLSNETSSSKRVKSKEFIEDDFSTSSSDEDAKETTAGAKKASRKQKP--LKKEGVKGFTDAEIRRFIKSYKKFARPVTRLDAISEDAELTDKSTSELKELSELLKSSCEQTVKEYEEKLLQDEQFDGKKKGASLKISGVTVNAHSVMKAERDLEPLATCLPEDEKQLKGFRLTIPTRSVHWGLPWGNIEDSMLLVGMLMYGIGNWDTIKNDQTLKLTNKILPTGKG-KPQEKQLMSRGEYLLRLL------RESQTDNPKQKKIKLKIKTSSIKSESKASSDHKKQDVSDEKPATVTLEEKPKKEKKKKSEKSEKKKKNEKSSSASNKTKDKGGSEENEITVKEIGELDDATFKSCKEKMRAEKKSLQQLHQPDQESSEQAQLQATKKCLLKIGDHIEKTLTTEFQHDQPLAENWRSKLWTFVSKFTELGASKLFKLYRTACRKR 1520
            E++S +E   +   +  +N ++ K  +K   QK R I +S +D   +     K++    +R A   VSYKE+ + +TDSDDL+E       Q +  EE+ ETIE+ +  R G  G TGA TTIYA +A+     GDP+     +K+  E+ YLIKWK WSH+H+TWET++ L  Q V+G+KKLDNY K+ +E  RW ++++PEDVEY+  QQE+ +D+ KQ+Q VERIIAH     S++GYPDY CKW GLPY EC+WEDGAL +K FQ  ID+Y  R +S T P ++ K L+QRP+F + K QP +IG  E L LRDYQ++G+NWL H+WC+  S ILADEMGLGKTIQTISFLNYLFH++ LYGPFL+VVPLST+ +WQRE   W   MN +VYLGD+NSR  I+ +EW   + ++LKFN+LLTTYE+LL+DK  LG LNWA + +DEAHRLKN+DSLLY+ LI+FK+N R LITGTPLQNSLKELWSLLHF+MP KF  W +FE ++    + G   LH++LEPFLLRRVKKDVEKSLPAKVEQILR+EMS +QKQYYK ILTRN + L +  KG+ SG LNI++ELKKCCNH  LIKP D          LQ LI  SGK+ILLDKLL RL+E G+RVLIFSQMVRMLDI+A+YL  ++FP+QRLDGSI+GELRK+ALDHFNAEGS+DFCFLLSTRAGGLGINLA+ADTV+IFDSDWNPQNDLQA ARAHRIGQK QVNIYR VTK ++EE+I+ERAKKKMVLDHL+IQRMDTTG+ +L   +APSS+ PFNKEELS+ILKFGAE+LFKE  +  +Q+   MDID+IL+RAE  E +    +V ++LLSQFKV N++  +E++I+  P  ++    K WEEIIP         +  ++++EE+ + PR R   +++     N +   +    +    D  S S             K+  ++ +P  + +E +KGF+DAEIRRFIKSYKKF  P+ RLDAI+ DAEL DKS ++L+ L EL+ + C + +K+      +     GK KG + +ISGV VNA  V+  E +L PL   +P D ++ K + +   T++ H+ + WG  +DS LL+G+  YG G+W+ IK D  L LT+KILP     KPQ KQL +R +YL++LL      +E+ +     K+ K + K    K+++  S   K++  SD  P      EK  ++  K SE     ++  K SS S+       S E     +E  ELD  TF  CKE+MR  K +L+QL +P++  SE+ QL+ T++CL+KIGDHI + L  E+ + + + + WR  LW FVSKFTE  A KL KLY+ A +KR
Sbjct:  177 ETESDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEEDYDNDKRS---SRRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPE--EEEFETIERFMDCRIGRKGATGATTTIYAVEAD-----GDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHS-NQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKE-PEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPERNS----KNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQISF---NGSEGRRSRSRRYSGSDSDSISE-----------GKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKKEALSGAGSSKRRKARAK----KNKAMKSIKVKEEIKSDSSPLP---SEKSDEDDDKLSESKSDGRERSKKSSVSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECL-KEYTNPEQIKQ-WRKNLWIFVSKFTEFDARKLHKLYKHAIKKR 1504

The following BLAST results are available for this feature:

BLAST of TCONS_00046627-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00046627-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CHD1	0.000e+0	51.35	Chromodomain-helicase-DNA-binding protein 1 OS=Hom...	[more]

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TCONS_00046627-protein (polypeptide) - C. hemisphaerica