TCONS_00046313-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046313-protein
Unique NameTCONS_00046313-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046313-protein ID=TCONS_00046313-protein|Name=TCONS_00046313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MSVDEDTELRDLVAQTLETNGVLNKIRAELRANVFLALEEQDALKKKTLS
NKTLKSFLETKEGMLAFNAVYEFLEFFNLDFTLAVLKPESNVSKLSPREK
LINDFNMQTVDPKQPLLVELLKKKVDGKPILSPPSSPKVSKIPQRVDKKP
TTAASDSKDKRVTSPEIDDDNDLLKELGVSPINFNKPSENTAKSKPSWLT
GDISTNSPPSASAKNDKENKPPPSSLGSLKGAPPLTGGGFNKKPLGEPAI
DVLSPEWDELINIDKKINELGFEIPAEDSTHSSTKSHTNTFSHTRSNKNA
TGAAGVGGAASKKSQQDEYNYDDDDFNSSVKSDENLSITEEIEENLSIGS
FGGSKNEDLMTSDHTVSQISETGVDYAEDADFY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029566XLOC_029566Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046313TCONS_00046313Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018993FOP_dimerisation-dom_N
IPR006594LisH
Vocabulary: Cellular Component
TermDefinition
GO:0005815microtubule organizing center
Vocabulary: Biological Process
TermDefinition
GO:0034453microtubule anchoring
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034453 microtubule anchoring
cellular_component GO:0005815 microtubule organizing center
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018993FGFR1 oncogene partner (FOP), N-terminal dimerisation domainPFAMPF09398FOP_dimercoord: 48..123
e-value: 8.5E-14
score: 51.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 274..338
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..248
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 62..94
score: 7.516

Blast
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BLAST of TCONS_00046313-protein vs. Swiss-Prot (Human)
Match: FR1OP (FGFR1 oncogene partner OS=Homo sapiens GN=FGFR1OP PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.464e-33
Identity = 82/185 (44.32%), Postives = 112/185 (60.54%), Query Frame = 0 
Query:    4 DEDTELRDLVAQTLETNGVLNKIRAELRANVFLALEEQDALKKKT-LSNKTLKSFLETKEGMLAFNAVYEFLEFFNLDFTLAVLKPE-SNVSKLSPREKLINDFNMQTVDPK--QPLLVELLKK-------------KVDGKPILSPPSSPKV--------SKIPQ-RVDKKPTTAASDSKDKRV 162
            +EDTELRDL+ QTLE +GVLN+I+AELRA VFLALEEQ+ ++ KT L N++LK FL TK+G L  + V EFL+FFNLDFTLAV +PE S +  L  RE L  D  +   +     PLL+E++++              +D   + SPP SP+         SKIP+ +   K  T+   + DK+ 
Sbjct:   11 EEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAEGTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKIPRYKGQGKKKTSGQKAGDKKA 195
The following BLAST results are available for this feature:
BLAST of TCONS_00046313-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FR1OP4.464e-3344.32FGFR1 oncogene partner OS=Homo sapiens GN=FGFR1OP ... [more]
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