TCONS_00046284-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046284-protein
Unique NameTCONS_00046284-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046284-protein ID=TCONS_00046284-protein|Name=TCONS_00046284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
MSEEKESGNIWPELDLTDSEDEETTTKLSKRKNILIECAPEVTKEEIEGD
FPMFLKNKDDGQSSDSEESDEEKKEAPKPKFNPYLAHNTTNKFDEKLRNL
QMKRNEARKLNHKEVAEEDMRKKLPKNYEAMRRKAEWEVADKQARQEAEE
AGEDYERVKMLGETAEDVEITDRRKRKKKNMDPGFSDYAAAQFRQYERLT
KQMKADDDEYERNKQKMGDNNFPSAHNLMYGTEDKVSETGIDRMVNDLEK
QIEKRSKFHRRRQHFDEADIDYINESNAKFNKKAERYYGQYTEEIRQNLE
RGTAI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029553XLOC_029553Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046284TCONS_00046284Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013260mRNA_splic_SYF2
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 196..216
NoneNo IPR availableCOILSCoilCoilcoord: 93..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
IPR013260mRNA splicing factor SYF2PFAMPF08231SYF2coord: 150..300
e-value: 1.0E-46
score: 159.2

Blast
[Close]
BLAST of TCONS_00046284-protein vs. Swiss-Prot (Human)
Match: SYF2 (Pre-mRNA-splicing factor SYF2 OS=Homo sapiens GN=SYF2 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 7.161e-75
Identity = 127/210 (60.48%), Postives = 163/210 (77.62%), Query Frame = 0 
Query:   96 KLRNLQMKRNEARKLNHKEVAEEDMRKKLPKNYEAMRRKAEWEVADKQARQEAEEAGEDYERVKMLGETAEDVEITDRRKRKKKNMDPGFSDYAAAQFRQYERLTKQMKADDDEYERNKQKMGDNNFPSAHNLMYGTEDKVSETGIDRMVNDLEKQIEKRSKFHRRRQHFDEADIDYINESNAKFNKKAERYYGQYTEEIRQNLERGTAI 305
            K R L + RNEARKLNH+EV EED R KLP N+EA + + EWE+ +++ ++E    GEDYE+VK+L  +AED E  +R+K K+KN D GFSDYAAAQ RQY RLTKQ+K D + YER ++K G+  FP++++L++GT    +E  IDRMV DLEKQIEKR K+ RRR + D+ADIDYINE NAKFNKKAER+YG+YT EI+QNLERGTA+
Sbjct:   36 KFRELHLMRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELKEEEKKKECAARGEDYEKVKLLEISAEDAERWERKK-KRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEE-IDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 243
The following BLAST results are available for this feature:
BLAST of TCONS_00046284-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYF27.161e-7560.48Pre-mRNA-splicing factor SYF2 OS=Homo sapiens GN=S... [more]
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