TCONS_00046260-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046260-protein
Unique NameTCONS_00046260-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046260-protein ID=TCONS_00046260-protein|Name=TCONS_00046260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
QGGMGAALLTEPEKIKSILTTLVNGVSIPVTCKIRILPELEDTLELVKLI
EKTGVKALGVHGRWRDLRSSQPCQCSFIKAIRETISIPVIANGGSLKIKK
YSDIASFKEETNCSSVMLARAAQWNPSVFRKEGNLDVKDIIKEYVKLAVE
YDSPDVNLKYVLCKMIGDTCGSELGRKVVASRDTQDICVATGLEEFRKQQ
IDKRKDKKRKLEEIEETDNCKKRKLDHIIAEVAYNRKIYPATESPIQKVH
ELCMAKRLGKPSWETVSGEDKMYKSVLTVGGIKYSSTLSDRRKKSAEQSA
AIVYLHHHNIHDGRLKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029546XLOC_029546Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046260TCONS_00046260Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
IPR013785Aldolase_TIM
IPR001269tRNA_hU_synthase
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008033 tRNA processing
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 197..217
NoneNo IPR availableGENE3D3.30.160.20coord: 216..315
e-value: 1.8E-12
score: 46.8
NoneNo IPR availableCDDcd00048DSRMcoord: 245..305
e-value: 2.08549E-5
score: 40.3335
NoneNo IPR availableCDDcd02801DUS_like_FMNcoord: 2..135
e-value: 1.58218E-49
score: 165.36
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 224..312
NoneNo IPR availableSUPERFAMILY51395FMN-linked oxidoreductasescoord: 2..168
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 245..309
e-value: 0.0066
score: 25.7
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 244..310
score: 8.591
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70coord: 1..132
e-value: 1.1E-23
score: 83.6
IPR001269tRNA-dihydrouridine synthasePFAMPF01207Duscoord: 2..161
e-value: 3.6E-32
score: 111.6

Blast
[Close]
BLAST of TCONS_00046260-protein vs. Swiss-Prot (Human)
Match: DUS2L (tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS2 PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.065e-89
Identity = 147/319 (46.08%), Postives = 212/319 (66.46%), Query Frame = 0 
Query:    1 QGGMGAALLTEPEKIKSILTTLVNGVSIPVTCKIRILPELEDTLELVKLIEKTGVKALGVHGRWRDLRSSQPCQCSFIKAIRETISIPVIANGGSL-KIKKYSDIASFKEETNCSSVMLARAAQWNPSVFRKEGNLDVKDIIKEYVKLAVEYDSPDVNLKYVLCKMIGDTCGSELGRKVVASRDTQDICVATGLEEFRKQQIDKRKDKKRKL--EEIEETDNCKKRKLDHIIAEVAYNRKIYPATESPIQKVHELCMAKRLGKPSWETVSGE-DKMYKSVLTVGGIKYSSTLSDRRKKSAEQSAAIVYLHHHNIHDGRL 315
            +GGMGAALL++P+KI+ IL+TLV G   PVTCKIRILP LEDTL LVK IE+TG+ A+ VHGR R+ R   P  C  IKAI +T+SIPVIANGGS   I++YSDI  F++ T  SSVM+ARAA WNPS+F KEG   +++++++Y++ AV+YD+   N KY LC+M+ +   S  GR + A++ +++IC A GL  F ++   +   ++ +L  +  E+T    +     I   V ++R+ YPA  +P   + E C  ++L +P +ETV    D+++ S++TV   KY STL D+ KK AEQ+AAIV L    + +GRL
Sbjct:  123 KGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGLPEGRL 441
The following BLAST results are available for this feature:
BLAST of TCONS_00046260-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS2L2.065e-8946.08tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS... [more]
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