TCONS_00046068-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00046068-protein
Unique Name	TCONS_00046068-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1395

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00046068-protein ID=TCONS_00046068-protein|Name=TCONS_00046068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1395bp
FSKVNSKKEINKMADSSIDDPSEIDMSVDETIKSPTSSYPDSLSSQVQSP
ANKSTEIKKKQDNGNRRISSRVKTKPDYFDASPILPSASKTKSAIQPSPL
VSPPNLASNSDIDTTLTTEQSQEDVSSEDETLSNFKKPPTVTRKRPAPKK
TTLDVTVKKTKSATKAKKSGKNSTINSSLFDIVKDGKSALMSVINDWIEN
YQSDKISAMTELIQFFVHCSGCNAEVTKNMLEAEDTVRTIRHLTENFGEQ
AEEYPIIISRPEFKKFKANFVSFISHLINLSQHSIIYDDDMMDILICWIT
CLSDSQVRAFRHTSTLAGMKIVSCLIDVALKVGVEMDHTQRQLDAESSKT
GNKKSREKIEKLKRRREELNHNKKDLEDMMYRLFSSIFMHRYRDIRPEIR
KICIAEMGQWMNKYSQYFLDENYLKYFGWTLYDKVGEVRLQVLNALEEIY
KNEDFLNKLELFTNRFQSRLVHMTLDTDTEVAVKAIKLTTLLYKYNVLEE
EDCSQVEQLVFCDQRGIAHAAGEFLALRIIRLSLAASPKKIKGSKDAYLE
QMNIKAILEFFIKTEIHQHCTYIVDSLWEHTDLLKNWKTLTNLLLHQNSM
IDLDDEEESALIDLMCCACKQAATAVSPPGRSLNKKLSIKEKRTMEDDRA
NLSVHFMEYLPKLVEKYKADVSKTNALLTLPQYFDLELYPEKRLTKNLDT
LLEHMEDIVTKSADTELLETISSTYHFLLQNELVIHQVVDISVNRLIDTI
FTKFKKSLVHGVPSDGKEKETQGYYNILTGLKRVLAFSKNHDLTDWNVYD
DVNPIIEEGVKGNVEDEILKLALHVMFHTFLQKLCAFDSEEPEKVELKQL
RKHQKIYVRQLDELLQYGSTEIKTEVFKLFCDFFMFFPRQLLNKEQKFGQ
IVSQPPPEVQVRMRDYVISHVFSEISDEDEQSETEDEEEDEVKSRQLSEK
RELLAGFCKLIAYEIFDIRLAAPIYAQFLRAFADYSDIIKQLMSICREND
IVKFSKVLLFALQQAFESLREENEGEIEARSSDFVKIKDLARRFALLLGV
NSNQDGTRKSTIVIHREGINYALSYPAETMNDDQQVPDVPPNLLFLEVLH
EFVFKIIKTDKKVIIRHFNEVSRGFAETKGHAWSSYRSYKSSLEAGTTGI
ESETTQSGEAEDELQAAMALEEKKKKKGGNKKSISFEDQAKKKLAPSSAD
KNQSKQQAAKKKLSMSKVTSDSWLSKKTLTEESDSDEQAPLSKVAKGIPK
LNKSADETIQSSADIDFRRSTKKGSVANDPIKLSGETTNDETAAEEDDVE
EAQNQSEEEQQEEEESEMNSSIPDDDASSQKSWLESKSSRKPNKDYSINE
NNLSKRKTLDDSSQDSDVSSVASSSQSREARAAKRRKRGSPDVEE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029419	XLOC_029419	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00046068	TCONS_00046068	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR013721	STAG
IPR020839	SCD
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1289..1319
None	No IPR available	COILS	Coil	Coil	coord: 352..379
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1171..1395
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..152
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 171..1027 e-value: 6.2E-11 score: 41.0
IPR013721	STAG	PFAM	PF08514	STAG	coord: 253..362 e-value: 1.1E-34 score: 118.6
IPR020839	Stromalin conservative domain	PROSITE	PS51425	SCD	coord: 388..473 score: 33.299
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 382..510 coord: 672..887 coord: 944..985

Blast

[Close]

BLAST of TCONS_00046068-protein vs. Swiss-Prot (Human)
Match: STAG1 (Cohesin subunit SA-1 OS=Homo sapiens GN=STAG1 PE=1 SV=3)

HSP 1 Score: 743.421 bits (1918), Expect = 0.000e+0
Identity = 407/1029 (39.55%), Postives = 630/1029 (61.22%), Query Frame = 0

Query:  137 KPPTVTRK-RPAP-KKTTLDVTVK---KTKSATKAKKSGKNSTINSSLFDIVKDGKSALMSVINDWIENYQSDKISAMTELIQFFVHCSGCNAEVTKNMLEAEDTVRTIRHLTENFGEQAEEYPIIISRPEFKKFKANFVSFISHLINLSQHSIIYDDDMMDILICWITCLSDSQVRAFRHTSTLAGMKIVSCLIDVALKVGVEMDHTQRQLDAESSKTGNKKSREKIEKLKRRREELNHNKKDLEDMMYRLFSSIFMHRYRDIRPEIRKICIAEMGQWMNKYSQYFLDENYLKYFGWTLYDKVGEVRLQVLNALEEIYKNEDFLNKLELFTNRFQSRLVHMTLDTDTEVAVKAIKLTTLLYKYN--VLEEEDCSQVEQLVFCDQRGIAHAAGEFLALRII-----RLSLAASPKKIKGSKDAYLEQMNIKAILEFFIKTEIHQHCTYIVDSLWEHT-DLLKNWKTLTNLLLHQNSMID--LDDEEESALIDLMCCACKQAATAVSPPGRSLNKK-LSIKEKRTMEDDRANLSVHFMEYLPKLVEKYKADVSKTNALLTLPQYFDLELYPEKRLTKNLDTLLEHMEDIVTKSADTELLETISSTYHFLLQNELVIHQVVDISVNRLIDTIFTKFKKSLVHGVPSDGKEKETQGYYNILTGLKRVLAFSKNHDLTDWNVYDDVNPIIEEGVK-GNVEDEILKLALHVMFHTFLQKLCAFDSEEPEKVELKQLRKHQKIYVRQLDELLQYGSTEIKTEVFKLFCDFFMFFPRQLLNKEQKFGQ-IVSQPPPEVQVRMRDYVISHVFSEISDEDEQSETEDEEEDEVKSRQLSEKRELLAGFCKLIAYEIFDIRLAAPIYAQFLRAFADYSDIIKQLMSICRENDIVKFSKVLLFALQQAFESLREENEGEIEARSSDFVKIKDLARRFALLLGVNSNQDGTRKSTIVIHREGINYALSYPAETMNDDQQVPDVPPNLLFLEVLHEFVFKIIKTDKKVIIRHFNE-VSRGFAETKGHAWSSYRSYKSSLEAG 1146
            +PP+  +K R +P +K+ ++  ++   + ++    +++G+   +  +LF++VK GKSA+ SV++DWIE+Y+ D+  A+ +LI FF+ CSGC   V   M         IR +TE F E + +YP+ +  P++KKF++NF  FI  LI   Q+SIIYD+ MMD +I  +T LSDSQVRAFRHTSTLA MK+++ L++VAL + +  D+TQRQ +AE +K   K++ E++E L ++R+EL  N+ ++E+MM  +F  IF+HRYRD   EIR ICI E+G WM  YS  FL+++YLKY GWTL+D+ GEVRL+ L AL+ +Y N +   KLELFTNRF+ R+V MTLD + +VAV+AI+L TL+   +   L  EDC  V  LV+   R +A AAGEFL  ++      +   A + ++ + S +  L    I+ ++ FF+++E+H+H  Y+VDSLWE + +LLK+W+ +T LLL +    +  + D +ESALI+LM C  +QAA A  P GR   K+ L+ KE++T  DDR  L+ HF+  LP L+ KY AD  K   LL +PQYFDLE+Y   R+ K+LD LL+ ++ +V K  ++++LE  S TY  L   E  I   VDI+ ++LID    +F  S V  +  +G+E +    YN+L+ LKR+ +F   HDLT W+++ +   +++ G++ G + ++I+  AL    ++ L +L       P K +L  LRK  K ++    + L   +T +K + F L CD  M F  QL+   ++  Q +V  P   +Q  +  +V+ HVF +  DE+ QS   DEE++  K   L ++R LLA F KLI Y+I D+  AA I+  +++ + DY DIIK+ +S  R+ D ++ +K L+ +LQQ F  L +E    ++  S+    IK+LARRFAL  G+  +Q  TR++   +H++GI +A  Y  +     Q+ P  PPNL FLEVL EF  K+++ DKK +  +  + ++    E +   W    SY++SL  G
Sbjct:   42 RPPSTNKKPRKSPGEKSRIEAGIRGAGRGRANGHPQQNGEGEPV--TLFEVVKLGKSAMQSVVDDWIESYKQDRDIALLDLINFFIQCSGCRGTVRIEMFRNMQNAEIIRKMTEEFDEDSGDYPLTMPGPQWKKFRSNFCEFIGVLIRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSIHQDNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNSIFKGIFVHRYRDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTLHDRQGEVRLKCLKALQSLYTNRELFPKLELFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLILHGSEEALSNEDCENVYHLVYSAHRPVAVAAGEFLHKKLFSRHDPQAEEALAKRRGRNSPNGNL----IRMLVLFFLESELHEHAAYLVDSLWESSQELLKDWECMTELLLEEPVQGEEAMSDRQESALIELMVCTIRQAAEAHPPVGRGTGKRVLTAKERKTQIDDRNKLTEHFIITLPMLLSKYSADAEKVANLLQIPQYFDLEIYSTGRMEKHLDALLKQIKFVVEKHVESDVLEACSKTYSILCSEEYTIQNRVDIARSQLIDEFVDRFNHS-VEDLLQEGEEADDDDIYNVLSTLKRLTSFHNAHDLTKWDLFGNCYRLLKTGIEHGAMPEQIVVQALQCSHYSILWQLVKITDGSPSKEDLLVLRKTVKSFLAVCQQCLSNVNTPVKEQAFMLLCDLLMIFSHQLMTGGREGLQPLVFNPDTGLQSELLSFVMDHVFID-QDEENQSMEGDEEDEANKIEALHKRRNLLAAFSKLIIYDIVDMHAAADIFKHYMKYYNDYGDIIKETLSKTRQIDKIQCAKTLILSLQQLFNELVQEQGPNLDRTSAHVSGIKELARRFALTFGL--DQIKTREAVATLHKDGIEFAFKYQNQK---GQEYP--PPNLAFLEVLSEFSSKLLRQDKKTVHSYLEKFLTEQMMERREDVWLPLISYRNSLVTG 1055

The following BLAST results are available for this feature:

BLAST of TCONS_00046068-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00046068-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
STAG1	0.000e+0	39.55	Cohesin subunit SA-1 OS=Homo sapiens GN=STAG1 PE=1...	[more]

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TCONS_00046068-protein (polypeptide) - C. hemisphaerica