TCONS_00046049-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046049-protein
Unique NameTCONS_00046049-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046049-protein ID=TCONS_00046049-protein|Name=TCONS_00046049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MADFFSKPKRSKVKTDGQSSKSAPKIIPWVEKYRPKQVTDVAYQNEVVAV
LQNTVKGDDFPNLLFYGPPGTGKTSTILAVCRQLFGHDLYKSRTLELNAS
DERGIQVVRDKVKTFASQSVSAKRPDGTPCPPFKIVILDEADSMTKHAQA
ALRRTMEKQTKTTRFCLICNYVSRIIEPITSRCAKFRFKPLSIDTITERL
AMISKGENVKINNSAIDTLIKAAEGDMRKAITFLQSAHRLKAGEEEITSN
DIVEMAGIIPAEIIESLTQTFSSGSFDKLDAKIKEIMMNGYSGSQLVTQI
HDSLVESEVLNDNQKAVIMEKLSVVDKCLCDGADEYLQIMAAAAVIMEQF
NKQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029418XLOC_029418Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046049TCONS_00046049Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR013748Rep_factorC_C
IPR003959ATPase_AAA_core
IPR008921DNA_pol3_clamp-load_cplx_C
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 59..194
e-value: 2.6E-12
score: 56.9
IPR013748Replication factor C, C-terminalPFAMPF08542Rep_fac_Ccoord: 260..343
e-value: 5.6E-16
score: 58.6
NoneNo IPR availableGENE3D3.40.50.300coord: 17..179
e-value: 2.8E-36
score: 124.3
NoneNo IPR availableGENE3D1.10.8.60coord: 180..258
e-value: 1.7E-22
score: 78.7
NoneNo IPR availableGENE3D1.20.272.10coord: 260..353
e-value: 1.4E-22
score: 79.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableCDDcd00009AAAcoord: 44..183
e-value: 9.54107E-23
score: 91.4387
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 63..189
e-value: 1.0E-16
score: 61.4
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILY48019post-AAA+ oligomerization domain-likecoord: 260..347
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 50..237

Blast
[Close]
BLAST of TCONS_00046049-protein vs. Swiss-Prot (Human)
Match: RFC4 (Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2)

HSP 1 Score: 438.728 bits (1127), Expect = 1.078e-154
Identity = 212/338 (62.72%), Postives = 269/338 (79.59%), Query Frame = 0 
Query:   15 TDGQSSKSAPKIIPWVEKYRPKQVTDVAYQNEVVAVLQNTVKGDDFPNLLFYGPPGTGKTSTILAVCRQLFGHDLYKSRTLELNASDERGIQVVRDKVKTFASQSVSAKRPDGTPCPPFKIVILDEADSMTKHAQAALRRTMEKQTKTTRFCLICNYVSRIIEPITSRCAKFRFKPLSIDTITERLAMISKGENVKINNSAIDTLIKAAEGDMRKAITFLQSAHRLKAGEEEITSNDIVEMAGIIPAEIIESLTQTFSSGSFDKLDAKIKEIMMNGYSGSQLVTQIHDSLVESEVLNDNQKAVIMEKLSVVDKCLCDGADEYLQIMAAAAVIMEQFNK 352
            + G++ K+ P  +PWVEKYRPK V +VA+Q EVVAVL+ +++G D PNLLFYGPPGTGKTSTILA  R+LFG +L++ R LELNASDERGIQVVR+KVK FA  +VS  R DG PCPPFKIVILDEADSMT  AQAALRRTMEK++KTTRFCLICNYVSRIIEP+TSRC+KFRFKPLS     +RL  I+K ENVKI++  I  L+K +EGD+RKAITFLQSA RL  G +EIT   I ++AG+IPAE I+ +     SGSFDKL+A +K+++  G++ +QLV Q+HD +VE+  L+D QK++I EKL+ VDKCL DGADE+LQ+++  A +M+Q ++
Sbjct:   28 SSGENKKAKP--VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGG-KEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENN-LSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQ 361
The following BLAST results are available for this feature:
BLAST of TCONS_00046049-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFC41.078e-15462.72Replication factor C subunit 4 OS=Homo sapiens GN=... [more]
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