TCONS_00046016-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046016-protein
Unique NameTCONS_00046016-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1074

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046016-protein ID=TCONS_00046016-protein|Name=TCONS_00046016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1074bp
QFFKKCKKIEKNRMEEEEDLLVLRIQALKSSARSKNNQQGSSNGETDDDA
ESLRKIALGSLKKVQTPDDIETPSHSEKTESTAPAQLSNSPERADEPSNN
VECPPNYFLTPTKADSDHQSRNMEELHLRERALKSLLKKRVVKTQSIIKK
AIQNENVSSTSVPAKASQKVEAIEDKQEDKPKKKAFRSKSVIQSTELRNF
IDNPAMESVVKSKQTEENVENFVGSDDELSLCASDHENDENIQCNVISSC
FDQENGNTVDERLVPPKKDTDINETSSPKDSMTNESIQEPVLNEAEQTEI
IKSDERPAVDSVNKDGDLTKSNLDSASSSLHDIDAGSSSSQVTEILDEGG
CSTTHSVIDEEVAGPSGYTSKNIHQTGSESSSDSVVEIDAPQGRFPRTLS
LITDSDESEAGALQSGKQKLRKKKKRKRTVKEKLSKQEGLMDEREDLQDL
NCSICLGPFEDRTFLKHCFHSFCYICIMQWSELSRLCPLCKKHFKTLIHH
VTKELDYEEYNYPEETEKPPEKRLNEFSENMDDGRRFRYASTIVDHEVWR
TRREERQRIESEQTQSRQQRKISRRLRWSATKDRRKAIYRMKMVVKEVKQ
RGKSLTRDISPEFFKRNPAIKHRLVPWLLRDLNALLGNDDEMIRFVMSLI
LNLISKVSMESSEFKEQLRGFLFEETDHFVDELVSFAKSPFDIRGYDSHV
VYDVPPPVIEIEDREDTMENKILHEVFIGDEAQSILTNQYVASGEESSSN
NTDAEESTNSNQPTTLEGENERQEQQSREEGSERADETEEKQDGENPVSI
EASFGTSKKKKKKHKKRKKQLQNESKNETANEIPEVIDLENDTDNKRLKK
KKKRKHEKRNKLDLTEIGSGKEIVDTPRKKKKHDKHNVDFHSEHSSENET
ESGNRGTLCKDGIHRNDVVEIESSHSEIENESQNKSNNQKKLKKKKKKKR
KSLRNENNENDVSVLLSRYLKNSNKDYNGFETAQQLHNYLHTQGNKHKNS
QKDIIKELLSIEKSMLRNQRKKEMNRLQNKQRHLEDERSKRRREGDEEYN
ENDDVIYEIDDQLEKLSWKLKKGK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029406XLOC_029406Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046016TCONS_00046016Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR002483PWI_dom
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 804..831
NoneNo IPR availableCOILSCoilCoilcoord: 1017..1044
NoneNo IPR availableCOILSCoilCoilcoord: 925..959
NoneNo IPR availableCOILSCoilCoilcoord: 6..26
NoneNo IPR availableCOILSCoilCoilcoord: 417..437
NoneNo IPR availableGENE3D1.20.1390.10coord: 594..781
e-value: 9.4E-8
score: 31.3
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 451..490
e-value: 3.0E-8
score: 33.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 361..386
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 256..342
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..189
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 742..960
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 406..436
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1020..1051
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 555..574
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 443..497
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 452..490
e-value: 8.9E-6
score: 35.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 452..491
score: 12.165
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 452..494
e-value: 1.2842E-12
score: 63.2336
IPR002483PWI domainPFAMPF01480PWIcoord: 624..683
e-value: 1.4E-6
score: 28.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 400..535
e-value: 2.9E-15
score: 55.4
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 468..477

Blast
[Close]
BLAST of TCONS_00046016-protein vs. Swiss-Prot (Human)
Match: TOPRS (E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.481e-44
Identity = 94/295 (31.86%), Postives = 145/295 (49.15%), Query Frame = 0 
Query:  449 DLNCSICLGPFEDRTFLKHCFHSFCYICIMQWSELSRLCPLCKKHFKTLIHHVTKELDYEEYNYPEETEKPPEKRLNEFSENMDDGRRFRYASTIV---DHEVWRTRREERQRIESE------------QTQSRQ------QRKISRRLRWSATK------------DRRKAIYRMKMVVKEVKQRGKSLTRDISPEFFKRNPAIKHRLVPWLLRDLNALLGNDDEMIRFVMSLILNLISKVSMESSEFKEQLRGFLFEETDHFVDELVSFAKSPFDIRGYDSHVVYDVPPPVIE 710
            D  C ICL  F++ ++L  C H FC+ C+ +WS+    CPLCK+ F ++ H V  E D++EY            R +     +   RRFRY +T+    +  V+       +R  +              T+ R        R+I+ R   +A +            + R+ +YR    V+ ++  G+   RDIS EFF+RNPA  HRLVPWL R+L  L G    ++  V  +I++ +++  +ES  F   LR FL   T+HF+ E +SFA+SPF++  +D H  YD P P  E
Sbjct:  100 DSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDSIFHSVRAEDDFKEYVL----------RPSYNGSFVTPDRRFRYRTTLTRERNASVYSPSGPVNRRTTTPPDSGVLFEGLGISTRPRDVEIPQFMRQIAVRRPTTADERSLRKIQEQDIINFRRTLYRAGARVRNIEDGGR--YRDISAEFFRRNPACLHRLVPWLKRELTVLFGAHGSLVNIVQHIIMSNVTRYDLESQAFVSDLRPFLLNRTEHFIHEFISFARSPFNMAAFDQHANYDCPAPSYE 382
The following BLAST results are available for this feature:
BLAST of TCONS_00046016-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TOPRS6.481e-4431.86E3 ubiquitin-protein ligase Topors OS=Homo sapiens... [more]
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