Rfx family transcription factor (polypeptide) - C. hemisphaerica

Overview
NameRfx family transcription factor
Unique NameTCONS_00046007-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046007-protein ID=TCONS_00046007-protein|Name=Rfx family transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=844bp
MTRQGKIVQPAHGDHTARDKHVKTKAEPVDTQLQPVDPLQQQEEGHVISP
LTRCMTREEIEILSNNSTSPLERDLIEYLRMQQQQQQQQQQQQQQQQQQQ
QQQNHHHQQNCQQNGATPFQPITNQHQQQQRKSFGYGNSPNLTRSNSTPM
KAYQTLSNASTAQNLSSPTDIANYMNGQNPMDASKLPHFPMPISQIKKEN
DFDQGYPSSELGQSYTSDQASSQAMVSSFPYGAGGTGNESMYSQQSNLHT
YMDSHGNASQNQMFQSYSAQGGHPGSMGLGVSPQAIGVAQQAQYLQPGQA
ASQRVPISHTTRASPITVQWLLENYETSDGVSLPRSTLYHHYLRHCAENK
IDAVNAASFGKLIRSVFVGLKTRRLGTRGNSKYHYYGIRVKPNSPLARIT
DDTHVALRATPTSSKRSMGSNNYDEERRTEGAASNAEDSSALSAHQQYLG
DVGDGLPEGPVIDLTEPLPEGLKKEDVITFGNYYRSHSEALLEVISTLQF
DLVEALWQSFYKSPAAANKADNGTLDNNEFNITKNDLITFCNYKPVQVFI
KETDYILYQKLVGVLVPDVLRAVPSALTQIVRNFAKSLENWLVGSMSEMP
KEICNVKVAAVSAFSQTLRRYTSLNHLAQAARAVLQNSQQINQMWNDLNK
VDFNNVQEQSSWVCQCDESLIAKLEQDFKQTLAQQHSLEQWAKWLESVVA
MVLEPHQGQESYPKAARNFLLNWSFYSSMIIRDLTLRSAASFGSFHLIRL
LYDEYMFYLIEHKVAAHTGKSPMSVMAECVGGMTSSSNGNQGNDDEDELD
ENSNDGLSALTSGDVLKTGANLTMSQINEGMEPVAKKLKPDHLG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029403XLOC_029403Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046007TCONS_00046007Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003150DNA-bd_RFX
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..104
NoneNo IPR availableGENE3D2.80.10.50coord: 25..207
e-value: 4.7E-4
score: 19.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 406..440
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 780..812
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
IPR003150DNA-binding RFX-type winged-helix domainPFAMPF02257RFX_DNA_bindingcoord: 316..391
e-value: 4.2E-33
score: 113.7
IPR003150DNA-binding RFX-type winged-helix domainPROSITEPS51526RFX_DBDcoord: 317..392
score: 27.967
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 317..392
e-value: 8.0E-37
score: 125.2
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 317..391

Blast
[Close]
BLAST of Rfx family transcription factor vs. Swiss-Prot (Human)
Match: RFX3 (Transcription factor RFX3 OS=Homo sapiens GN=RFX3 PE=1 SV=2)

HSP 1 Score: 591.652 bits (1524), Expect = 0.000e+0
Identity = 308/627 (49.12%), Postives = 413/627 (65.87%), Query Frame = 0 
Query:  227 SSFPYGAGGTGNESMYSQQSNLHTYMDSHGNASQ-NQMFQSYSAQGGHPGSMGLGVSPQAIGVAQQAQYLQPGQAASQRVPISHTTRASPITV-------------------------QWLLENYETSDGVSLPRSTLYHHYLRHCAENKIDAVNAASFGKLIRSVFVGLKTRRLGTRGNSKYHYYGIRVKPNSPLARITDDT-HVALRATPTSSKRSMGSNNYDEERRTEGAASNAEDSS------------ALSAHQQYLGDVGDGLPEGPVIDLTEPLPEGLKKEDVITFGNYYRSHSEALLEVISTLQFDLVEALWQSFYK-SPAAANKADNGTLDNN----EFNITKNDLITFCNYKPVQVFIKETDYILYQKLVGVLVPDVLRAVPSALTQIVRNFAKSLENWLVGSMSEMPKEICNVKVAAVSAFSQTLRRYTSLNHLAQAARAVLQNSQQINQMWNDLNKVDFNNVQEQSSWVCQCDESLIAKLEQDFKQTLAQQHSLEQWAKWLESVVAMVLEPHQGQESYPKAARNFLLNWSFYSSMIIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHKVAAHTGKSPMSVMAECVGGMTSSSNGN----QGNDDEDELDENSND 805
            +++PY         MYSQ +    Y D+ G+++Q   +  S+S  G   G + +GV+   +  +    YL      +    ++HTTRASP T+                         QWLL+NYET++GVSLPRSTLY+HYLRHC E+K+D VNAASFGKLIRS+F+GL+TRRLGTRGNSKYHYYGIRVKP+SPL R+ +D  ++A+R  P   K+      Y   ++ +G A     S             A S H Q   D    LPE   ++++  LP+G   ED+ +  + YR H EA+L+V+  LQF L+E LWQ+F++ SP+        T  +N    E  + K  LIT C ++ +  ++   D+ +YQ LV +L+PDVLR +PSALTQ +RNFAKSLE WL  +M+ +P+ +   KVAAVSAF+QTLRRYTSLNHLAQAARAVLQN+ QINQM +DLN+VDF NVQEQ+SWVCQCD++++ +LE DFK TL QQ +LEQWA WL++V+   L+P++G+ S+PKAAR FLL WSFYSSM+IRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA  TG++P++VM E  G + + S GN    +G++ E E+DE  +D
Sbjct:   75 TTYPYT-----ETQMYSQNTG-GNYFDTQGSSAQVTTVVSSHSMVG--TGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIEMAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQ-----RYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS-LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMGE-FGDLNAVSPGNLDKDEGSEVESEMDEELDD 686
The following BLAST results are available for this feature:
BLAST of Rfx family transcription factor vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFX30.000e+049.12Transcription factor RFX3 OS=Homo sapiens GN=RFX3 ... [more]
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