TCONS_00045999-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00045999-protein
Unique Name	TCONS_00045999-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1360

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00045999-protein ID=TCONS_00045999-protein|Name=TCONS_00045999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1360bp
MILLKDKRSLNSAASVAESLDSAIKELEKHFISDTKFPTLEEQLKIGSYP
NFSGVNDFDYQPLASADGISGGDKQVTSTKRVPLPDELLEQFAHMQCNCV
MGLFPEISRAWLAIDSDIYFWVYEDGSDIAYYDGIKEVILAAGLVTPKPG
IFQEHIKHILCVTTPVNIYLLGLNLSERQQSLSGDMFGTLQLHPEPLFVI
PTDNVYLTSICGTANGRIFLGGKDGCLYEVVYQVQKVWFGKQCYKINHSS
SKMSFLVPNFVTNAIYKEDAISQLAVDNSRGILYYRTEEGNIKVCYLGEQ
MDTFRFVASANSSSLAAESAYVTRTVDKKNFEKIVHIAPVSKNDASYTHL
VGITQTGVRLYFTTTSFNNPYGEPYLIKLIHIRMPPGYAPSLSSQKPGNI
HAAFYRKGLCLAIGSLSTDMDKFWCFSPDAFPFKMNLKESQSTFNIDGHT
WSLGEIPDFGEYTNTPGHLFKETFQDPPAIVTEHVHPPRRFILLSAQGSH
IITTLRPVEQLQSALSSGYGADSDLIAAYFQQYGTTQACATFLVLICQSR
ESEKELADLATEAFFRFGDEQAVQEMQSMSTTHYPMQQPTMQNNSYIVRS
PTQGGSSQGSFLGTPIAQGLHQTIQTPQPPNMNSTLVNQTTTQHKLNDGQ
STFSGKHNGIYLYFTRIMRPIWNYPLVFETIDCNGKHQLMSRISATDLSW
FIVRLQSLKNFLTRYSDTTLSQSPVHRTYHTLTPKHGSNNSHLTEKSSLM
AFLHLVSMSIEGLELWRLICEHQFHVVIHNANQEIQEQIRQIAFKDLFSP
NGQQLSTQLVNCVMATCMSDNTAVETTSDYLRNACPSLFSADDAICAKAN
KIVQNSSSIQSTVERNRNFFEAIKLYSEVPHLIDLQWTCDQFASYYFYEG
IVEVCLNIAVKRDPTGVALHYFKNGEPRDDVEGMEMFNYRNEAYSCITQT
LENLLNQITNPATLSIPSRPGPPVNSEISTLTAESAQNHYDNIITRSLTS
RDELFHVALFDWLIKKDQTNTLLQIKSPFLEHYLITLAAQQHPGNKKTLD
LVWMYYEKNNNFIAAAKILLKLAEMQGPSLTIHNRMEYLSRAVVTTKSSS
ATANSNEGEFLQEIEEKLDVARVQLKIFEELSKKKSNSPEMNDAMVKLNS
KLFDISTLYGEFAEEFSLPECKLDIIACANHNNETLVKQIWKEIQDKLFT
EVRHLPMEERGKVVAMEMIKHGKEYAQNEQFFPINFLVNQMEIRACELNL
DQTWVFSMFLEMEVPISSLLMTYATLIGLKEITWKTLGKPLHLWGSFALL
TSYLLDNNKFESTRLSMCRSLFETTTSYLVDLDSMDASEPEVRVLLQRFK
NNQMRLKRML

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029398	XLOC_029398	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00045999	TCONS_00045999	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007187	Nucleoporin_Nup133/Nup155_C
IPR015943	WD40/YVTN_repeat-like_dom
IPR014908	Nucleoporin_Nup133/Nup155_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1346..1360
None	No IPR available	COILS	Coil	Coil	coord: 1111..1131
None	No IPR available	GENE3D	1.10.405.10		coord: 736..880 e-value: 0.0039 score: 16.8
IPR007187	Nucleoporin, Nup133/Nup155-like, C-terminal	PFAM	PF03177	Nucleoporin_C	coord: 783..1237 e-value: 1.7E-26 score: 93.1
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 159..509 e-value: 1.1E-10 score: 40.4
IPR014908	Nucleoporin, Nup133/Nup155-like, N-terminal	PFAM	PF08801	Nucleoporin_N	coord: 76..501 e-value: 2.1E-78 score: 263.9

Blast

[Close]

BLAST of TCONS_00045999-protein vs. Swiss-Prot (Human)
Match: NU155 (Nuclear pore complex protein Nup155 OS=Homo sapiens GN=NUP155 PE=1 SV=1)

HSP 1 Score: 1026.93 bits (2654), Expect = 0.000e+0
Identity = 541/1399 (38.67%), Postives = 836/1399 (59.76%), Query Frame = 0

Query:   12 SAASVAESLDSAIKELEKHFISDTKFPTLEEQLKIGS--YPNFSGVNDFDYQPLASADGISGGD-KQVTSTKRVPLPDELLEQFAHMQCNCVMGLFPEISRAWLAIDSDIYFWVYEDGSDIAYYDGIKEVILAAGLVTPKPGIFQEHIKHILCVTTPVNIYLLGL---NLSERQQSLSGDMFGTLQLHPEPLFVIPTDNVYLTSICGTANGRIFLGGKDGCLYEVVYQVQKVWFGKQCYKINHSSSKMSFLVPNFVTNAIYKEDAISQLAVDNSRGILYYRTEEGNIKVCYLGEQMDTFRFVASANSSSLAAESAYVTRTVDKKNFEKIVHIAPVSKNDASYTHLVGITQTGVRLYFTTTSFNNPYGEPYLIKLIHIRMPPGYAPSLSSQKPGNIHAAFYRKGLCLAIGSLSTDMDKFWCFSPDAFPFKMNLKESQSTFNIDGHTWSLGEIPDFG-EYTNTPGHLFKETFQDPPAIVTEHVHPPRRFILLSAQGSHIITTLRPVEQLQSALSSGYGADSDLIAAYFQQYGTTQACATFLVLICQSRESEKELADLATEAFFRFGDEQAVQEMQSMSTTHYPMQQPTMQNNSYIVRSPTQGGSSQG--------SFLGTPIAQGLHQTIQTPQPPNMNSTL------VNQTTTQHKLNDGQSTFSGKHNGIYLYFTRIMRPIWNYPLVFETIDCNGKHQLM---SRISATDLSWFIVRLQSLKNFLTRYSDTTLSQSPV----------HRTYHTLTPKHGS------------NNSHLTEKSSLMAFLHLVSMSIEGLELWRLICEHQFHVVIHNANQEIQEQIRQIAFKDLFSPNGQQLSTQLVNCVMATCMSDNTAVETTSDYLRNACPSLFSADDAICAKANKIVQNSSSIQSTVERNRNFFEAIKLYSEVPHLIDLQWTCDQFASYYFYEGIVEVCLNIAVKRDPTGVALHYFKNGEPRDDVEGMEMFNYRNEAYSCITQTLENLLNQI-TNPATLSIPSRPGPPV-NSEISTLTAESAQNHYDNIITRSLTSRDELFHVALFDWLIKKDQTNTLLQIKSPFLEHYLITLAAQQHPGNKKTLDLVWMYYEKNNNFIAAAKILLKLAEMQGPSLTIHNRMEYLSRAVVTTKSSSATAN-SNEGEFLQEIEEKLDVARVQLKIFEELSKKKSNSPEMNDAMVKLNSKLFDISTLYGEFAEEFSLPECKLDIIACANHNNETLVKQIWKEIQDKLFTEVRHLPMEERGKVVAMEMIKHGKEYAQNEQFFPINFLVNQMEIRACELNLDQTWVFSMFLEMEVPISSLLMTYATLIGLKEITWKTLGKPLHLWGSFALLTSYLLDN--NKFESTRLSMCRSLFETTTSYLVDLDSMDASEPEVRVLLQRFKNNQMRLKRM 1359
            SAA++ E+L++A + +++    D  +P L E L + +   P  SG++D DY PL     +S  +  +++S +RVPLP EL+EQF HMQCNC+MG+FP ISRAWL IDSDI+ W YEDG D+AY+DG+ E ILA GLV PK GIFQ H++H+L + TPV+I +LGL   NL      L+  + G +QL P+PL+ +PTDN YL +I  T NGRIFL GKDGCLYEV YQ +  WF ++C KINHS S +SFLVP+ +     ++D I Q+A+DNSR ILY R+E+G I+V  LG+       VAS + +++ + +  + RT+D+  F+ IV IA +  +++    L+ +T  GVRLYF+T  F  P   P  + L+H+R+PPG++ S + +KP  +H A Y KG+ L   S + D D  WC + D FPF+  + E+Q T  +DGH+W+L  I +   +   TP +       D P +V +H+ PP++F+LLSAQGS +   LRPV+QL+  L S  G D + I  +F+ +   QACAT L+L C +   ++E++  AT AFFR+G E         +   +P   P   N   I+ SP    S           SFLGTP + G+       QPP M++ +        Q T    +   +  +SGKHNGI +YF+RIM  IW+  LV E I  +G  ++    S +    L   +  L+ L+ FL R  ++  +  P+           R    + P++G+            + + L+EK SL A   LV  S + L LW+L+CEHQF +++    +E+QEQ++   FKDL   + ++L+  L+  ++   + DN AV+  S +L++ CP L+S DDAIC+KAN+++Q S  +Q+  E+ R   E++K Y ++ + +DL   C Q+    FYEG+VE+ L  A K+DP G+ LH++K+GEP +D+ G++ F  R  +Y CIT TL+ L+NQ    P + S+P +PGPPV +S+ + L+ E A +H++ ++  S  S+DELF +AL++WLI+ D  + LLQ+ SPFLE +L+ +A        + +DL+W YYEKN +F  AA++L +LA+M    +++  R+EY++RA+++ KSS+A ++ + +GEFL E+EEK++VAR+QL+I E L ++ S+   + DA+ +L+S+L DI+ LYGEFA+ F L ECKL II CA +++  LV+ +W++I +K  ++   L   +R   ++++++  GK YA   +FFP++F+V  +E + C LN D  +V     E+ VP+  LL  Y  L   ++  W  + KPLHL     +L    ++N        R        +    YLV+L SM +S   V+ +   FK+ Q +L+R+
Sbjct:   15 SAAALQEALENAGRLIDRQLQEDRMYPDLSELLMVSAPNNPTVSGMSDMDY-PLQGPGLLSVPNLPEISSIRRVPLPPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLPTDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLLQFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAAGNIARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTLTLVHVRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQMTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWATRAFFRYGGE---------AQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTP-SHGI-------QPPAMSTPVCALGNPATQATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFKSGNREITAIESSVPCQLLESVLQELKGLQEFLDR--NSQFAGGPLGNPNTTAKVQQRLIGFMRPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAELQKELQEQLKITTFKDLVIRD-KELTGALIASLINCYIRDNAAVDGISLHLQDICPLLYSTDDAICSKANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGVVELSLTAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCITDTLQELVNQSKAAPQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLADKLLQVASPFLEPHLVRMAKVDQ-NRVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEISLQQRLEYIARAILSAKSSTAISSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHSSVQDAVSQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQDIIEKELSDSVTLSSSDRMHALSLKIVLLGKIYAGTPRFFPLDFIVQFLEQQVCTLNWDVGFVIQTMNEIGVPLPRLLEVYDQLFKSRDPFWNRMKKPLHLLDCIHVLLIRYVENPSQVLNCERRRFTNLCLDAVCGYLVELQSMSSSV-AVQAITGNFKSLQAKLERL 1390

The following BLAST results are available for this feature:

BLAST of TCONS_00045999-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00045999-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NU155	0.000e+0	38.67	Nuclear pore complex protein Nup155 OS=Homo sapien...	[more]

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TCONS_00045999-protein (polypeptide) - C. hemisphaerica