TCONS_00045983-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045983-protein
Unique NameTCONS_00045983-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045983-protein ID=TCONS_00045983-protein|Name=TCONS_00045983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MEFIRRMLGMVEYKPYKVQDCFGKKRVGLTASNFKDLKNKAKLKLNLENV
DSVYLEDGTEVEDDSYLLSLPTQTVLIVLQIGEVWEGYISYLKMASNKII
ENVAMRTLTINKIQELLLDPESPELSLIMDFVHTIHSNLDAEHIEDDPDW
FEGVASNYKNKTHVMRDSAKNRIRGYLAKTKDFASSTKMPGKKVRVEFTN
IIDQFQNELKERGYYGQIFDRFASEKESDVIKLCDDKGWFTCQGAFDMKD
CERVHRINPYASKDARVLFSTWNLDHRTKLKNPNPKDEKLTSLKKQRWET
KRTSKRQPKSRFSSKQKTIKWPFKSKKWPMKRTVKAENRPQNGLESLRPS
PKSWACGRTNLQL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029391XLOC_029391Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045983TCONS_00045983Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003508CIDE-N_dom
IPR015311Apoptosis_DFF40
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006915apoptotic process
GO:0006309apoptotic DNA fragmentation
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006309 apoptotic DNA fragmentation
biological_process GO:0006915 apoptotic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005622 intracellular
cellular_component GO:0005634 nucleus
molecular_function GO:0016787 hydrolase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003508CIDE-N domainSMARTSM00266CAD_1coord: 14..85
e-value: 2.5E-9
score: 47.0
IPR003508CIDE-N domainPFAMPF02017CIDE-Ncoord: 14..85
e-value: 5.8E-20
score: 71.0
IPR003508CIDE-N domainPROSITEPS51135CIDE_Ncoord: 12..87
score: 20.628
IPR015311Apoptosis, DNA fragmentation factor 40kDaPFAMPF09230DFF40coord: 111..279
e-value: 4.9E-50
score: 170.1
NoneNo IPR availableGENE3D3.10.20.10coord: 12..88
e-value: 1.5E-20
score: 72.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 279..317
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 329..363
NoneNo IPR availableSUPERFAMILY54060His-Me finger endonucleasescoord: 107..280
NoneNo IPR availableSUPERFAMILY54277CAD & PB1 domainscoord: 12..92

Blast
[Close]
BLAST of TCONS_00045983-protein vs. Swiss-Prot (Human)
Match: DFFB (DNA fragmentation factor subunit beta OS=Homo sapiens GN=DFFB PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.316e-50
Identity = 88/256 (34.38%), Postives = 143/256 (55.86%), Query Frame = 0 
Query:   25 KRVGLTASNFKDLKNKAKLKLNLENVDS--VYLEDGTEVEDDSYLLSLPTQTVLIVLQIGEVWEGYISYLKMASNKIIE-NVAMRTLTINKIQELLLDPESPELS-LIMDFVHTIHSNLDAEHIEDDPDWFEGVASNYKNKTHVMRDSAKNRIRGYLAKTKDFASSTKMPGKKVRVEFTNIIDQFQNELKERGYYGQIFDRFASEKESDVIKLCDDKGWFTCQGAFDMKDCERVHRINPYASKDARVLFSTWNLDH 276
            ++ G+   + +++  K  L+  L    S     EDGTE+ +D Y  S+P    L++L +G+ W+GY+S ++   +   E  V +    I   Q+LL D ++P+   L+ D +H +  N+ AE   +DP WFEG+ S +++K+  +R S ++RIR YL +   + S+    G + + EF  ++      L+   Y G  FDR A        +LC  +GWF+CQG FDM  C   H INPY+++++R+LFSTWNLDH
Sbjct:   17 RKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTELTED-YFPSVPDNAELVLLTLGQAWQGYVSDIRRFLSAFHEPQVGL----IQAAQQLLCDEQAPQRQRLLADLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGYLRYSCESRIRSYLREVSSYPSTV---GAEAQEEFLRVLGSMCQRLRSMQYNGSYFDRGAKGGS----RLCTPEGWFSCQGPFDMDSCLSRHSINPYSNRESRILFSTWNLDH 260
The following BLAST results are available for this feature:
BLAST of TCONS_00045983-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DFFB5.316e-5034.38DNA fragmentation factor subunit beta OS=Homo sapi... [more]
back to top