TCONS_00045839-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045839-protein
Unique NameTCONS_00045839-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045839-protein ID=TCONS_00045839-protein|Name=TCONS_00045839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp
MFGRLIHLPRLFAGNFYKHSVRNISVNILKKSSQEDNNKMSSQESMKLIT
KNLQEVIGMDRMKAIVDERPLSLYWGTATTGKPHIAYFVPMTKIADFLKA
GCEVTILFADLHAYLDNMKAPWELLEKRVVYYQEIIKAMLEALDVPLEKL
KFVKGTDYQLSREYTLDVFKLTTVATEHDCKKAGSEVVKQVQYPLLSGLL
YPGLQALDEEYLKVDAQFGGVDQRKIFTFAEKYLPALGYKKRIHLMNPMV
PGLTGAKMSSSEADSKIDLLDEPKALKKKISKAFCEEGNIKENGILSFCK
FVLYPIMELKGQEGLSIKRSEENGGDIVFQKYEDLEQIFADKKLHPGDFK
NGVSDYLNQLLQPIRTKFQSAELKKLTNEAYPPPKKEKQPKGGATPQREV
TPARLDLRIGKIVSVSNHPDAESLYVEQIDVGEEKPRTVVSGLRQYVTLD
DLNNRLVVLLCNLKPANMRGVKSEGMLLAASKTNMDGQRVVVPLDPPSDS
KPGDRVYVEGFSHEQHGEPDEQLNPKKKVFETLKPNLLVSDEQRAEFNGQ
PMKTSLGEITAKLANAEIS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029300XLOC_029300Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045839TCONS_00045839Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002307Tyr-tRNA-ligase
IPR014729Rossmann-like_a/b/a_fold
IPR002305aa-tRNA-synth_Ic
IPR002547tRNA-bd_dom
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0006437tyrosyl-tRNA aminoacylation
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0004831tyrosine-tRNA ligase activity
GO:0005524ATP binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0000049tRNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006418 tRNA aminoacylation for protein translation
biological_process GO:0006437 tyrosyl-tRNA aminoacylation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0000049 tRNA binding
molecular_function GO:0004831 tyrosine-tRNA ligase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002307Tyrosine-tRNA ligasePRINTSPR01040TRNASYNTHTYRcoord: 82..104
score: 30.87
coord: 193..208
score: 39.38
coord: 210..232
score: 36.96
coord: 243..255
score: 34.1
IPR002307Tyrosine-tRNA ligaseTIGRFAMTIGR00234TIGR00234coord: 42..371
e-value: 3.7E-56
score: 188.9
IPR002307Tyrosine-tRNA ligaseCDDcd00805TyrRS_corecoord: 71..360
e-value: 1.00845E-85
score: 268.705
NoneNo IPR availableGENE3D1.10.240.10coord: 243..381
e-value: 9.4E-46
score: 154.9
NoneNo IPR availableGENE3D2.40.50.140coord: 400..569
e-value: 1.3E-54
score: 184.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 376..399
NoneNo IPR availableCDDcd02799tRNA_bind_EMAP-II_likecoord: 400..507
e-value: 2.40014E-54
score: 179.732
NoneNo IPR availableSUPERFAMILY52374Nucleotidylyl transferasecoord: 20..373
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 32..242
e-value: 6.1E-48
score: 162.6
IPR002305Aminoacyl-tRNA synthetase, class IcPFAMPF00579tRNA-synt_1bcoord: 68..362
e-value: 1.4E-66
score: 224.7
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 407..504
e-value: 7.1E-30
score: 102.9
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 401..507
score: 34.212
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 401..560

Blast
[Close]
BLAST of TCONS_00045839-protein vs. Swiss-Prot (Human)
Match: SYYC (Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1 SV=4)

HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0
Identity = 335/526 (63.69%), Postives = 417/526 (79.28%), Query Frame = 0 
Query:   41 SSQESMKLITKNLQEVIGMDRMKAIVDERPLSLYWGTATTGKPHIAYFVPMTKIADFLKAGCEVTILFADLHAYLDNMKAPWELLEKRVVYYQEIIKAMLEALDVPLEKLKFVKGTDYQLSREYTLDVFKLTTVATEHDCKKAGSEVVKQVQYPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTFAEKYLPALGYKKRIHLMNPMVPGLTGAKMSSSEADSKIDLLDEPKALKKKISKAFCEEGNIKENGILSFCKFVLYPIMELKGQEGLSIKRSEENGGDIVFQKYEDLEQIFADKKLHPGDFKNGVSDYLNQLLQPIRTKFQSAELKKLTNEAYPPPKKEKQ----PKGGATPQREVTPARLDLRIGKIVSVSNHPDAESLYVEQIDVGEEKPRTVVSGLRQYVTLDDLNNRLVVLLCNLKPANMRGVKSEGMLLAASKTNMDGQRVVVPLDPPSDSKPGDRVYVEGFSHEQHGEPDEQLNPKKKVFETLKPNLLVSDEQRAEFNGQPMKTSLGEITAK 562
            S +E + LIT+NLQEV+G +++K I+ ER L +YWGTATTGKPH+AYFVPM+KIADFLKAGCEVTILFADLHAYLDNMKAPWELLE RV YY+ +IKAMLE++ VPLEKLKF+KGTDYQLS+EYTLDV++L++V T+HD KKAG+EVVKQV++PLLSGLLYPGLQALDEEYLKVDAQFGG+DQRKIFTFAEKYLPALGY KR+HLMNPMVPGLTG+KMSSSE +SKIDLLD  + +KKK+ KAFCE GN++ NG+LSF K VL+P+     +    I R E+ GG+  +  Y DLE+ FA + +HPGD KN V   LN+LL PIR KF +  LKKL + AYP P K+K     P   + P+ EV P+RLD+R+GKI++V  HPDA+SLYVE+IDVGE +PRTVVSGL Q+V  ++L +RLVV+LCNLKP  MRGV+S+GMLL AS   ++  R V PLDPP+ S PG+ V+V+G+   + G+PDE+L PKKKVFE L+ +  +S+E  A++      T LG I+ K
Sbjct:    6 SPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPL-----KSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEPE-EVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGIN--RQVEPLDPPAGSAPGEHVFVKGY---EKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCK 520
The following BLAST results are available for this feature:
BLAST of TCONS_00045839-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYYC0.000e+063.69Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens... [more]
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