TCONS_00045748-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00045748-protein
Unique Name	TCONS_00045748-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	750

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00045748-protein ID=TCONS_00045748-protein|Name=TCONS_00045748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=750bp
MDDDRGRPPQQNGIDTIEMGLFADTSEYFDHNSNEPAPEDDLGLSNLFAD
LPSNLDHTRSYQSASRRSLRRRGSRTPNVDDGRSKSLVRSDVAGIIDMED
GLHEDELRSIPAPMAQRKSVRRMNQTLKQSEKERQKSLSCWKFFKLRVAM
GWYRFKSNLKEFLKVLELWRSPLKEVEGHFGNGVLSYFIFLKSLILLNLV
IFFLVFGFIVVPQVVINYGELVQNITQNYIVTVDSTTANFTCPNEDKDFY
KNRTLSNNILDFFTGEGYINTTLMFYSNYQGDIYTSVSNNDITYNMELAY
ICVGGAYLIISLIMMVKNLAQGFTESIVETGGFFYSYCNKVFAGWDYCIT
DSKAAFLKCKSIAKDFKAELSEEKRLERIKGRTQFDKLKIYSFRMLVTII
VLGLLAVSIFAIIKAVEVSSNPELSRETNSVLVILKRWASSLTISALNVC
LPFIFEILTSLEDWSPRVEVALTLWRAVLLKLASVAVLVITLFTSYSEHD
CHICWENQVGSQMFNLILIDFFVSVGITIFGETGRKYIYRYLGCGCNLGE
KIGMQEFQIPKNVLELVYGQSLIWIGTFFAPLIPVVGIIKLFILFYVKKI
SLMLNCKPSSQPYQGARSNYFFTLLLLLTFLLCSFAVGWGLTRIKTSCCG
PFKNVGCVADYEMMDVVGRTIDSWPSWIGGIIDFIKTTAFIFPMFIIIFL
LLYYYYAMTKAHEKMIHMLKDQLIMEGRDKRFLMDRLIRASEAKKSNLSQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029234	XLOC_029234	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00045748	TCONS_00045748	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012496	TMC

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012496	TMC	PFAM	PF07810	TMC	coord: 504..614 e-value: 5.1E-37 score: 126.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..84

Blast

[Close]

BLAST of TCONS_00045748-protein vs. Swiss-Prot (Human)
Match: TMC7 (Transmembrane channel-like protein 7 OS=Homo sapiens GN=TMC7 PE=1 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 1.164e-129
Identity = 244/731 (33.38%), Postives = 401/731 (54.86%), Query Frame = 0

Query:   33 SNEPA--PEDDLGLSNLFADLPSN-LDHTRSYQSASRRSLRRRGSRTPNVDDGRSKSLVRSDVAGIIDMEDGLHED----ELRSIPAPMAQRKSVRRMNQTLKQSEKERQKSLSCWKFFKLRVAMGWYRFKSNLKEFLKVLELWRSPLKEVEGHFGNGVLSYFIFLKSLILLNLVIFFLVFGFIVVPQVVINYGELVQNITQNYIVTVDSTTANFTCPNEDKDFYKNRTLSNNILDFFTGEGYINTTLMFYSNYQGDIYTSVSNNDITYNMELAYICVGGAYLIISLIMMVKNLAQGFTESIVETGGFFYSYCNKVFAGWDYCITDSKAAFLKCKSIAKDFKAELSEEKRLERIKGRTQFDKLKIYSFRMLVTIIVLGLLAVSIFAIIKAVEVSSNPELSRETNSVLV---ILKRWASSLTISALNVCLPFIFEILTSLEDWSPRVEVALTLWRAVLLKLASVAVLVITL---FTSYSEHDCHIC---------WENQVGSQMFNLILIDFFVSVGITIFGETGRKYIYRYLGCGCNLGEKIGMQEFQIPKNVLELVYGQSLIWIGTFFAPLIPVVGIIKLFILFYVKKISLMLNCKPSSQPYQGARSNYFFTLLLLLTFLLCSFAVGWGLTRIKTS-CCGPFKNVGCVADYEMMDVVGRTIDSWPSWIGGIIDFIKTTAFIFPMFIIIFLLLYYYYAMTKAHEKMIHMLKDQLIMEGRDKRFLMDRLIRA 740
            S +PA  PE+    S+ F+  P N L    SY+S +RR        T +  D +S +L++   +    +ED + E+     LR+    +++++ +R + +T       + K LS W  +K   +  W RF    +E    LELWR  ++ +EG FG G+ SYF FL+ L+LLNLVIF ++F  +++P ++  Y      IT +  V +     +  C              + I+D  +G G++  T +FY +Y  D    V   + TY++ LAY+    A L +SL+ +VK   +GF  +++ +   F SYCNK+FAGWD+CIT+   A LK  S+  + +A+L EE+  ++I  RT  + ++IYS R+ +  IVL +L    +AI  A  V S   + +E + ++    +   +  S+ I+  N   P IF  +   ED+SP  E+ LT+ R V ++LA++ VLV TL    TS  +  C +C         WE QVG +M+ L++ DF + + +T+F +  RK +  Y    C L +  G QEF IP NVL +VYGQ++ WIG FF+PL+P +  +K  I+FYVK+ SL+  C+PS +P++ + SN+FF L+LL+   L    +   ++RI +S  CGPF N          +V+ +T+ ++PS +   I  + + AF  P F+II L+++Y+ A+  AH++++  L++QL +E RDK +L+ +L  A
Sbjct:   15 SRQPAVHPENLSLDSSCFSSPPVNFLQELPSYRSIARRR------TTVHSRDKQSGTLLKPTDSYSSQLEDRIAENLSSHSLRNYALNISEKRRLRDIQET-------QMKYLSEWDQWKRYSSKSWKRFLEKAREMTTHLELWREDIRSIEGKFGTGIQSYFSFLRFLVLLNLVIFLIIFMLVLLPVLLTKY-----KITNSSFVLIPFKDMDKQCTVYPVSSSGLIYFYSYIIDLLSGTGFLEETSLFYGHYTID---GVKFQNFTYDLPLAYLLSTIASLALSLLWIVKRSVEGFKINLIRSEEHFQSYCNKIFAGWDFCITNRSMADLKHSSLRYELRADLEEERMRQKIAERTSEETIRIYSLRLFLNCIVLAVLGACFYAIYVAT-VFSQEHMKKEIDKMVFGENLFILYLPSIVITLANFITPMIFAKIIRYEDYSPGFEIRLTILRCVFMRLATICVLVFTLGSKITSCDDDTCDLCGYNQKLYPCWETQVGQEMYKLMIFDFIIILAVTLFVDFPRKLLVTYCS-SCKLIQCWGQQEFAIPDNVLGIVYGQTICWIGAFFSPLLPAIATLKFIIIFYVKEWSLLYTCRPSPRPFRASNSNFFFLLVLLIGLCLAIIPLTISISRIPSSKACGPFTNFNTT-----WEVIPKTVSTFPSSLQSFIHGVTSEAFAVPFFMIICLIMFYFIALAGAHKRVVIQLREQLSLESRDKCYLIQKLTEA 717

The following BLAST results are available for this feature:

BLAST of TCONS_00045748-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00045748-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TMC7	1.164e-129	33.38	Transmembrane channel-like protein 7 OS=Homo sapie...	[more]

You are here

TCONS_00045748-protein (polypeptide) - C. hemisphaerica