TCONS_00045709-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045709-protein
Unique NameTCONS_00045709-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045709-protein ID=TCONS_00045709-protein|Name=TCONS_00045709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
GCPVTIKLSKRKEHEMNCKYAPVVCPNSSLCPMLIKMELDSHLSHCKHAR
CPHSRFSCPFEGTSDELVGHLESCRFEGMKEFLVHSEKQMNELKDIIKMK
QKESDYLKGTISDLKGKLQNTELTFARRIDQLEERLAKVSTVASQNSGVL
VDVEKQLASMDSRAFNLGAFDVQSVLKCKGTFVGHQGPVCTLCVSSSLLF
SGSSDNSIKVWDTRSNYTCIATFTEHTGMVLALNAYRGRLYSGSADCTIS
VFDIDNLKLIENFRADDNAICTLAVANGMLFSGSLKSIKVWSLDSLKNIT
VLSPMNHWVRALATSENKLYCGAYKTIKVYDMKNFEPLHVIDSQGGHVYS
LVVSSDYIIAGTYENCILVWNKNSYNKIAKLTGHAGIVYSLVLMTIVDSN
RVISASYDGSLRVWSLDNMQCVQTLFRHQGSVTTLAVSRGRIFSGSVDRT
VKVWQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029213XLOC_029213Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045709TCONS_00045709Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR013083Znf_RING/FYVE/PHD
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR001293Znf_TRAF
IPR017986WD40_repeat_dom
IPR013010Znf_SIAH
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 83..103
NoneNo IPR availableGENE3D2.140.10.10coord: 412..455
e-value: 3.7E-14
score: 51.7
NoneNo IPR availableGENE3D2.40.50.140coord: 366..411
e-value: 1.1E-11
score: 43.7
NoneNo IPR availableGENE3D1.20.5.50coord: 75..154
e-value: 7.7E-4
score: 18.7
NoneNo IPR availableCDDcd00200WD40coord: 178..455
e-value: 6.19571E-46
score: 161.349
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 199..213
score: 41.16
coord: 442..455
score: 33.79
coord: 402..416
score: 31.99
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 295..331
e-value: 48.0
score: 6.4
coord: 418..455
e-value: 1.8E-6
score: 37.5
coord: 216..253
e-value: 0.0031
score: 26.7
coord: 256..292
e-value: 5.0
score: 12.6
coord: 374..415
e-value: 0.0023
score: 27.2
coord: 334..371
e-value: 0.5
score: 18.9
coord: 175..212
e-value: 4.7E-8
score: 42.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 420..454
e-value: 8.0E-4
score: 20.1
coord: 177..212
e-value: 1.1E-5
score: 25.9
coord: 377..415
e-value: 0.0051
score: 17.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 182..215
score: 12.313
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 425..455
score: 11.645
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 381..424
score: 11.712
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 46..74
e-value: 0.0081
score: 15.8
coord: 1..43
e-value: 2.6E-6
score: 27.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 244..365
e-value: 8.5E-24
score: 83.5
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 155..243
e-value: 7.0E-18
score: 64.4
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 199..213
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 14..77
score: 8.949
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 182..455
score: 40.497
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 176..455
IPR013010Zinc finger, SIAH-typePROSITEPS51081ZF_SIAHcoord: 1..76
score: 9.527
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 1..33

Blast
[Close]
BLAST of TCONS_00045709-protein vs. Swiss-Prot (Human)
Match: TRAF7 (E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1 SV=1)

HSP 1 Score: 464.537 bits (1194), Expect = 8.479e-159
Identity = 228/461 (49.46%), Postives = 311/461 (67.46%), Query Frame = 0 
Query:    1 GCPVTIKLSKRKEHEMNCKYAPVVCPNSSLCPMLIKMELDSHLSHCKHARCPHSRFSCPFEGTSDELVGHLESCRFEGMKEFLVHSEKQMNELKDIIKMKQKESDYLKGTISDLKGKLQNTELTFARRIDQLEERLAKVSTVASQNSGVLVDVEKQLASMDSRAFN---LGAFDVQSVLKCKGTFVGHQGPVCTLCVSS--SLLFSGSSDNSIKVWDTRSNYTCIATFTEHTGMVLALNAYRGRLYSGSADCTISVFDIDNLKLIENFRADDNAICTLAVANGMLFSGSLKSIKVWSL--DSLKNITVLSPMNHWVRALATSENKLYCGAYKTIKVYDMKNFEPLHVIDSQGGHVYSLVVSSDYIIAGTYENCILVWNKNSYNKIAKLTGHAGIVYSLVLMTIVDSNRVISASYDGSLRVWSLDNMQCVQTLFRHQGSVTTLAVSRGRIFSGSVDRTVKVW 454
            GCP TIKLS RK+HE +C Y PV CPN+  CP L++M L++HL  C+H +CPHS++ C F G  D    HLE+CRFEG+KEFL  ++ + +E+   +  K +E  +L+  +  L  K+   E +   + D L+E  +K+S    +       +  +L+ +++R  N   LG++D Q + KCKGTFVGHQGPV  LCV S   LLFSGSSD +IKVWDT + Y C  T   H G+VLAL     +LYSGSADCTI V+DI NL+ +   RA DN +CTL  ++ +LFSGSLK+IKVW +    LK    L+ +NHWVRAL  +++ LY G+Y+TIK++D++  + +HV+ + GG VYS+ V++ +I+ GTYEN I VW+  S  ++  LTGH G VY+L +++  D  +V SASYD SLRVWS+DNM C QTL RHQGSVT LAVSRGR+FSG+VD TVKVW
Sbjct:  209 GCPFTIKLSARKDHEGSCDYRPVRCPNNPSCPPLLRMNLEAHLKECEHIKCPHSKYGCTFIGNQDTYETHLETCRFEGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLDENQSKLSEDLMEFRRDASMLNDELSHINAR-LNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNVLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAAQSYLYSGSYQTIKIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVW 668
The following BLAST results are available for this feature:
BLAST of TCONS_00045709-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF78.479e-15949.46E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens ... [more]
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