TCONS_00045691-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045691-protein
Unique NameTCONS_00045691-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045691-protein ID=TCONS_00045691-protein|Name=TCONS_00045691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=639bp
LDYIIIMSKRKYKIAQLSDEEEEKSENLGGLNLFRKLKAAETENSKPGIS
KNISEGSEIATKIQNATTPKAEEHKSKEETLSQQTASAKLALTKQGEMSK
TNPSCKNFRETFAANSNKKDVFDLPPMPEPKEKVVPKNKNNIIVNSRQRG
NPILKHIRNIPWEYGDIIPDYEIGERACALYLSMRYHSLNPDYIHERLKK
LGNMYDLRVLLVQVDVVNSKPGLKELGRIAMYSNLTMILAWTFEEAGRYL
ETYKSYEFKPPDIIQQRTETDHLSKVQDFLTTVKSVNKTDVLTLLSTFGS
VLNIVNATKQELGDCPGFGSQKATRLYQAFNEPFKSAHSKQDESTEFRQT
KLTSYSSKLPKDCKLRRPSDVLSNSQIAVGEDNEAEKDDPLIEKKTTVKD
ISKKKAKSSQSDKPKEKQTENQQRTDDTSTEDSKTAKSKSPYKTRESRQT
LMSKSEAIHSFMKNKDKPPSTFETPTLSVNVSPVKLDQQPSKNKTVNTTK
RRLPSDDKISTNSPDPVYKTSLKSGKPDNFAMPLQLNSIKTSTKASKLSI
TSSKSATNSTTKFPEKLEKPLVDTSQPVTSITEKLGMPLVNTSKQSSISI
TNTTAATGKTNTNQTTLTQEEYDDLLADENDSDDSLMDY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029204XLOC_029204Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045691TCONS_00045691Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004579ERCC1/RAD10/SWI10
IPR011335Restrct_endonuc-II-like
IPR010994RuvA_2-like
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0004519endonuclease activity
GO:0003684damaged DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
cellular_component GO:0005634 nucleus
molecular_function GO:0003684 damaged DNA binding
molecular_function GO:0004519 endonuclease activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004579ERCC1/RAD10/SWI10 familyTIGRFAMTIGR00597TIGR00597coord: 140..251
e-value: 2.8E-45
score: 150.8
IPR004579ERCC1/RAD10/SWI10 familyPFAMPF03834Rad10coord: 141..254
e-value: 1.8E-46
score: 156.8
IPR004579ERCC1/RAD10/SWI10 familyPRODOMPD013585coord: 146..268
e-value: 6.0E-34
score: 366.0
NoneNo IPR availablePFAMPF14520HHH_5coord: 279..329
e-value: 7.8E-6
score: 26.3
NoneNo IPR availableGENE3D1.10.150.20coord: 262..345
e-value: 1.4E-11
score: 43.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 605..639
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 374..579
IPR011335Restriction endonuclease type II-likeSUPERFAMILY52980Restriction endonuclease-likecoord: 140..267
IPR010994RuvA domain 2-likeSUPERFAMILY47781RuvA domain 2-likecoord: 265..334

Blast
[Close]
BLAST of TCONS_00045691-protein vs. Swiss-Prot (Human)
Match: ERCC1 (DNA excision repair protein ERCC-1 OS=Homo sapiens GN=ERCC1 PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 8.490e-84
Identity = 116/206 (56.31%), Postives = 160/206 (77.67%), Query Frame = 0 
Query:  130 PKEKVVPKNKNN-IIVNSRQRGNPILKHIRNIPWEYGDIIPDYEIGERACALYLSMRYHSLNPDYIHERLKKLGNMYDLRVLLVQVDVVNSKPGLKELGRIAMYSNLTMILAWTFEEAGRYLETYKSYEFKPPDIIQQRTETDHLSKVQDFLTTVKSVNKTDVLTLLSTFGSVLNIVNATKQELGDCPGFGSQKATRLYQAFNEPF 334
            P + + P  K+N IIV+ RQRGNP+LK +RN+PWE+GD+IPDY +G+  CAL+LS+RYH+L+PDYIH RL+ LG  + LRVLLVQVDV + +  LKEL ++ + ++ T+ILAW+ EEAGRYLETYK+YE KP D++ ++ E D +S+V + LTTVKSVNKTD  TLL+TFGS+  ++ A++++L  CPG G QKA RL+   +EPF
Sbjct:   88 PNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 293
The following BLAST results are available for this feature:
BLAST of TCONS_00045691-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERCC18.490e-8456.31DNA excision repair protein ERCC-1 OS=Homo sapiens... [more]
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