TCONS_00045690-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045690-protein
Unique NameTCONS_00045690-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length781

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045690-protein ID=TCONS_00045690-protein|Name=TCONS_00045690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=781bp
MAASYLKEYGFDVEFVEKLDRDDIKCAICFMVLREPFQGSKCGHRYCKKC
IEEFHEKNPKKCPQDWQDNEWFKDLGKEREILDLKIRCKNHRDGCTWQNE
LRDQEEHLKTCDFESIQCHLRCGEVVLRKNLINHLDKDCPLISTCEYSDF
GCLFKGTRDQLYNHMSQAINQHFSLEMKHEIKNVKKEFSDKLQEKDLKIQ
EITNEFDAQLKEKDDEIKRLRKDVKGTKKDLQRACNENNENHKANEETKK
HFTRVINETKTEQQTAIEETKKDFNRVVDETKIEQQKAIEETKKDFTRVI
DETKTEQQKAIEETKKDFTRVIDKTKTEQQKAIEETKNNFNRVIDETKIE
QQKAIEETKKNLTRVIDETKIEQQKAIEETKKDFTRVINQSKTEHQKAIK
ETKNDFTRVVNQRKTEQQKAIAETKKDFNRVVDETKIEQQKAIEETKKDF
TRVINQSKTEQQKAIKETKNDFTRVVNQRKTEQQKAIAETKKDFNRVVDE
TKIEQQKAIAETKKDFNRVVDETKIEQQKAIEKTKKNLTRVIDETKIEQQ
KAIEETKKDFTRVINETKTEQQKALNKSMENLSMMLYITDENTNEFISGS
LRQKSDHVHNLNKKLAEENKLTLQILSLPQCPYSFTIENFKTQFEEAKKT
NKRISSPNFLTVNGYLGRLGIFLNGFRDAQDNHVSVYFQNLKGPYDNSLK
WPIPWKSHIMTLLVNSRQIGKMSYQSSSDGGKWKDHFIRPIDDGCKSMGF
PKAFDRKLIDNLTDEDVVAIKYGMDCEVQEH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029203XLOC_029203Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045690TCONS_00045690Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR008974TRAF-like
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 535..555
NoneNo IPR availableCOILSCoilCoilcoord: 326..346
NoneNo IPR availableCOILSCoilCoilcoord: 185..237
NoneNo IPR availableCOILSCoilCoilcoord: 352..379
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 25..64
e-value: 2.2E-7
score: 30.5
NoneNo IPR availableGENE3D1.20.5.1230coord: 160..353
e-value: 2.9E-4
score: 20.2
NoneNo IPR availableGENE3D1.20.1270.110coord: 539..583
e-value: 0.32
score: 10.5
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 21..67
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 26..65
e-value: 1.8E-4
score: 30.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 26..65
score: 10.719
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 25..63
e-value: 1.74335E-9
score: 53.6036
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 21..81
e-value: 1.5E-9
score: 36.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 127..159
e-value: 1.2E-5
score: 24.9
coord: 82..126
e-value: 7.0E-13
score: 48.1
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 107..164
e-value: 6.0E-11
score: 42.8
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 107..161
score: 10.618
IPR008974TRAF-likeGENE3D2.60.210.10coord: 612..775
e-value: 2.0E-16
score: 59.8
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 84..155
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 633..760
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 42..51

Blast
[Close]
BLAST of TCONS_00045690-protein vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.338e-25
Identity = 60/151 (39.74%), Postives = 82/151 (54.30%), Query Frame = 0 
Query:   10 GFDVEFVEKLDRDDIKCAICFMVLREPFQGSKCGHRYCKKCIEEFHEKNPKKCPQDWQDNEW---FKDLGKEREILDLKIRCKNHRDGCTWQNELRDQEEHLKTCDFESIQCHLRCGEVVLRKNLINHLDKDCPLIST-CEYSDFGCLFKG 156
            GFD +F+EK  R  + C +C   +REP Q S CGHR+C  C++EF  +   KCP+D    ++   + D   E ++L L IRC +  +GC W   LR  + HL TC F  I C  RC   + R++L  HL  DCP     CE+   GC F G
Sbjct:    3 GFDYKFLEKPKRR-LLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFC--GCDFSG 150
The following BLAST results are available for this feature:
BLAST of TCONS_00045690-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF42.338e-2539.74TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
back to top