TCONS_00045645-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045645-protein
Unique NameTCONS_00045645-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length188

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045645-protein ID=TCONS_00045645-protein|Name=TCONS_00045645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MGIDLDHRKDKKKSRKAPVSQDPYIRLLVKLYRFLARRTNSKFNEVILKR
LFMSRINRPPLSIARIARRVSKPGCEGKIIVCVGSITDDLRLTTVPKLKV
CALRFTEGARTRITKAGGECITFDQLALKAPTGKGTLLIQGPRNSRESCR
HFGRAPGVPHSSTKPFVRAKGRKFEKARGRRASRGYKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029187XLOC_029187Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045645TCONS_00045645Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021131Ribosomal_L18e/L15P
IPR021132Ribosomal_L18e_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021131Ribosomal protein L18e/L15PPFAMPF17135Ribosomal_L18coord: 2..188
e-value: 3.7E-94
score: 313.3
IPR021131Ribosomal protein L18e/L15PSUPERFAMILY52080Ribosomal proteins L15p and L18ecoord: 21..139
NoneNo IPR availableGENE3D3.100.10.10coord: 16..142
e-value: 5.8E-62
score: 206.7
IPR021132Ribosomal protein L18e, conserved sitePROSITEPS01106RIBOSOMAL_L18Ecoord: 49..66

Blast
[Close]
BLAST of TCONS_00045645-protein vs. Swiss-Prot (Human)
Match: RL18 (60S ribosomal protein L18 OS=Homo sapiens GN=RPL18 PE=1 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 1.326e-83
Identity = 128/187 (68.45%), Postives = 153/187 (81.82%), Query Frame = 0 
Query:    1 MGIDLDHRKDKKKSRKAPVSQDPYIRLLVKLYRFLARRTNSKFNEVILKRLFMSRINRPPLSIARIARRVSKPGCEGKIIVCVGSITDDLRLTTVPKLKVCALRFTEGARTRITKAGGECITFDQLALKAPTGKGTLLIQGPRNSRESCRHFGRAPGVPHSSTKPFVRAKGRKFEKARGRRASRGYK 187
            MG+D+ H KD+K  RK P SQD Y+RLLVKLYRFLARRTNS FN+V+LKRLFMSR NRPPLS++R+ R++  PG E K  V VG+ITDD+R+  VPKLKVCALR T  AR+RI +AGG+ +TFDQLAL +P G GT+L+ GPR  RE  RHFG+APG PHS TKP+VR+KGRKFE+ARGRRASRGYK
Sbjct:    1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187
The following BLAST results are available for this feature:
BLAST of TCONS_00045645-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL181.326e-8368.4560S ribosomal protein L18 OS=Homo sapiens GN=RPL18... [more]
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