TCONS_00045641-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045641-protein
Unique NameTCONS_00045641-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045641-protein ID=TCONS_00045641-protein|Name=TCONS_00045641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MSEGIEALQLKEEDVTKFLASGAHLGAQNVDRHLESYVYKRKADGIHIIN
LRKTWEKLVLAARVIAGIENPADVCVLSSRPYGTRAVLKFAHHTGATPIA
GRFTPGTFTNQIQKAFREPRLLVVTDPQFDHQSITESSYVNIPVIALCNT
DSPSRFVDIAIPCNNRGVQAIGTMWWMLAREVLFLRGIISRKTPWDVMPD
LYFYREPEDIEKEEQAAALAAAKPEETYPQTTSSDWVSAPAATEQVGGST
DWGEQPATTTTDWASEPVTGKVEGFSAVKEDDWGASNYKSAGWEADTTNT
TTTADWGASTTEGDWA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029185XLOC_029185Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045641TCONS_00045641Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001865Ribosomal_S2
IPR03228140S_SA_C
IPR005707Ribosomal_S2_euk/arc
IPR018130Ribosomal_S2_CS
IPR027498Ribosomal_S2_euk
IPR023591Ribosomal_S2_flav_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001865Ribosomal protein S2PRINTSPR00395RIBOSOMALS2coord: 15..33
score: 32.23
coord: 45..54
score: 65.54
coord: 136..147
score: 52.82
coord: 157..171
score: 46.36
coord: 94..111
score: 48.46
coord: 119..136
score: 41.79
IPR001865Ribosomal protein S2PFAMPF00318Ribosomal_S2coord: 112..182
e-value: 7.7E-13
score: 48.1
IPR001865Ribosomal protein S2CDDcd01425RPS2coord: 18..183
e-value: 7.06548E-68
score: 211.672
NoneNo IPR availableGENE3D3.40.50.10490coord: 14..220
e-value: 5.8E-69
score: 231.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..316
IPR03228140S ribosomal protein SA, C-terminal domainPFAMPF1612240S_SA_Ccoord: 202..307
e-value: 4.7E-10
score: 40.6
IPR005707Ribosomal protein S2, eukaryotic/archaealTIGRFAMTIGR01012TIGR01012coord: 11..206
e-value: 3.7E-85
score: 282.3
IPR018130Ribosomal protein S2, conserved sitePROSITEPS00963RIBOSOMAL_S2_2coord: 119..143
IPR018130Ribosomal protein S2, conserved sitePROSITEPS00962RIBOSOMAL_S2_1coord: 15..26
IPR027498Ribosomal protein S2, eukaryoticHAMAPMF_03015Ribosomal_S2_eukcoord: 2..266
score: 53.254
IPR023591Ribosomal protein S2, flavodoxin-like domainSUPERFAMILY52313Ribosomal protein S2coord: 9..200

Blast
[Close]
BLAST of TCONS_00045641-protein vs. Swiss-Prot (Human)
Match: RSSA (40S ribosomal protein SA OS=Homo sapiens GN=RPSA PE=1 SV=4)

HSP 1 Score: 368.622 bits (945), Expect = 1.119e-128
Identity = 185/298 (62.08%), Postives = 216/298 (72.48%), Query Frame = 0 
Query:    1 MSEGIEALQLKEEDVTKFLASGAHLGAQNVDRHLESYVYKRKADGIHIINLRKTWEKLVLAARVIAGIENPADVCVLSSRPYGTRAVLKFAHHTGATPIAGRFTPGTFTNQIQKAFREPRLLVVTDPQFDHQSITESSYVNIPVIALCNTDSPSRFVDIAIPCNNRGVQAIGTMWWMLAREVLFLRGIISRKTPWDVMPDLYFYREPEDIEKEEQAAALAAA------------KPEETYPQTTSSDW---VSAPAATEQVGGSTDWGEQPATTTTDWASEPVTGKVEGFSAVKEDDW 283
            MS  ++ LQ+KEEDV KFLA+G HLG  N+D  +E Y+YKRK+DGI+IINL++TWEKL+LAAR I  IENPADV V+SSR  G RAVLKFA  TGATPIAGRFTPGTFTNQIQ AFREPRLLVVTDP+ DHQ +TE+SYVN+P IALCNTDSP R+VDIAIPCNN+G  ++G MWWMLAREVL +RG ISR+ PW+VMPDLYFYR+PE+IEKEEQAAA  A              PE T  Q   +DW   V  P+   Q   + DW  QPA  T DW++ P     E   A    DW
Sbjct:    1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPA--TEDWSAAPTAQATEWVGATT--DW 294
The following BLAST results are available for this feature:
BLAST of TCONS_00045641-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSSA1.119e-12862.0840S ribosomal protein SA OS=Homo sapiens GN=RPSA P... [more]
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