TCONS_00045622-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045622-protein
Unique NameTCONS_00045622-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length187

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045622-protein ID=TCONS_00045622-protein|Name=TCONS_00045622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MFNKVKILVVGPSESGKTVISNFLADATESAGGDYHPTQGVRILEFEVDN
LEMPGGSESIEVELWDCSGDNRFEMCWPSMQKDANGVLFVYNPTRKSHES
ELEKWHLHFAKEQGLRNEQCLMMAHVKPGNENPKKAGIGGSLGKVRCVVT
DLDNEPDNVRMSFNLFLRNVVALVSDRREQEELSIIE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029169XLOC_029169Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045622TCONS_00045622Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013684MIRO-like
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013684Mitochondrial Rho-likePFAMPF08477Roccoord: 6..120
e-value: 1.9E-13
score: 50.6
NoneNo IPR availableGENE3D3.40.50.300coord: 3..159
e-value: 1.2E-17
score: 63.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..121

Blast
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BLAST of TCONS_00045622-protein vs. Swiss-Prot (Human)
Match: IFT22 (Intraflagellar transport protein 22 homolog OS=Homo sapiens GN=IFT22 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.023e-53
Identity = 78/184 (42.39%), Postives = 126/184 (68.48%), Query Frame = 0 
Query:    4 KVKILVVGPSESGKTVISNFLADATESAGGDYHPTQGVRILEFEVDNLEMPGGSESIEVELWDCSGDNRFEMCWPSMQKDANGVLFVYNPTRKSHESELEKWHLHFAKEQGLRNEQCLMMAHVKPGNENPKKA-GIGGSLGKVRCVVTDLDNEPDNVRMSFNLFLRNVVALVSDRREQEELSII 186
            K KIL VGP ESGKTV++NFL ++++    +Y PTQGVRILEFE  ++         E ELWDC GD +FE CWP++ KDA+GV+ V+N    SH  E+E W+  F ++  L++ QC+++AH KPG+ + K +  +   L K++ V ++L+++P+ +RM F  +L++++  +S+ R++EE+SI+
Sbjct:    3 KAKILFVGPCESGKTVLANFLTESSDIT--EYSPTQGVRILEFENPHVTSNNKGTGCEFELWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIM 184
The following BLAST results are available for this feature:
BLAST of TCONS_00045622-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IFT227.023e-5342.39Intraflagellar transport protein 22 homolog OS=Hom... [more]
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