TCONS_00045614-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045614-protein
Unique NameTCONS_00045614-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045614-protein ID=TCONS_00045614-protein|Name=TCONS_00045614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp
MATKAAETHENSNILNFNIGVLGHVDSGKTSLSKALSIVASTAAFDKNPQ
SKERGITLDLGFSSFLVDFPDHLKKSSTSSYDKLQFTLVDCPGHASLIKT
IIGGAQIIDMMMLVVDVVKGMQTQTAECLVIGEILCEKMVVVLNKVDLIP
EQKRQATIEKMTKRMLKTLENTKFANSTVIAVAANVGASEITTDVQRIGM
DQLITCLQSQAYIPTRNPEGSLLFSVDHCFSIRGQGTVMTGTVLNGSVSV
NDNVEIPILKETKKVKSMQMFRKPVKSIVQGDRAGICVTQFDPKKLERGV
VCSPGFLPTLYGGIVKVHKIPYFKGKCLNKAKFHITVGHETVMGKLQFFG
KPPSDNDHVDEEQFSTDTEYEFQEELNEKTQTKLANTNDRETQYVMIEFD
HPVIGQADSLVIGSRLDTDINLNTCRLAFYGRIVLPFLSRDYQKEELPKL
KIFKWKSKEGTVERMADEYSVIVKSLFKKETNLALFTNMKVKLSSGDEGT
IEGSFGQSGKIKVRIPKGLADSTKERLSTTKKGKGKQANESGGEAKEPIK
VLLEFKKYIYDSSHKMIQT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029164XLOC_029164Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045614TCONS_00045614Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000795TF_GTP-bd_dom
IPR004161EFTu-like_2
IPR027417P-loop_NTPase
IPR009000Transl_B-barrel
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005525GTP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 370..390
NoneNo IPR availableGENE3D3.40.50.300coord: 12..212
e-value: 2.4E-25
score: 88.5
NoneNo IPR availableGENE3D2.40.30.10coord: 217..311
e-value: 1.3E-26
score: 92.0
NoneNo IPR availableGENE3D2.40.30.10coord: 313..379
e-value: 0.29
score: 10.7
NoneNo IPR availablePFAMPF00009GTP_EFTUcoord: 17..187
e-value: 7.0E-29
score: 100.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 520..544
NoneNo IPR availableCDDcd01889SelB_eukcoord: 17..190
e-value: 8.0016E-103
score: 310.067
NoneNo IPR availableCDDcd04094eSelB_IIIcoord: 309..433
e-value: 6.47202E-37
score: 131.673
NoneNo IPR availableCDDcd03696selB_IIcoord: 222..304
e-value: 5.0858E-37
score: 131.06
IPR000795Transcription factor, GTP-binding domainPRINTSPR00315ELONGATNFCTcoord: 139..148
score: 47.25
coord: 87..97
score: 50.06
coord: 103..114
score: 30.22
coord: 18..31
score: 65.36
IPR000795Transcription factor, GTP-binding domainPROSITEPS51722G_TR_2coord: 14..215
score: 36.382
IPR004161Translation elongation factor EFTu-like, domain 2PFAMPF03144GTP_EFTU_D2coord: 236..299
e-value: 9.8E-8
score: 32.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 17..237
IPR009000Translation protein, beta-barrel domainSUPERFAMILY50447Translation proteinscoord: 216..306

Blast
[Close]
BLAST of TCONS_00045614-protein vs. Swiss-Prot (Human)
Match: SELB (Selenocysteine-specific elongation factor OS=Homo sapiens GN=EEFSEC PE=1 SV=4)

HSP 1 Score: 624.394 bits (1609), Expect = 0.000e+0
Identity = 322/593 (54.30%), Postives = 402/593 (67.79%), Query Frame = 0 
Query:   15 LNFNIGVLGHVDSGKTSLSKALSIVASTAAFDKNPQSKERGITLDLGFSSFLVDFPDHLKKS-----------STSSYDKLQFTLVDCPGHASLIKTIIGGAQIIDMMMLVVDVVKGMQTQTAECLVIGEILCEKMVVVLNKVDLIPEQKRQATIEKMTKRMLKTLENTKFANSTVIAVAANVGASEITTDVQRIGMDQLITCLQSQAYIPTRNPEGSLLFSVDHCFSIRGQGTVMTGTVLNGSVSVNDNVEIPILKETKKVKSMQMFRKPVKSIVQGDRAGICVTQFDPKKLERGVVCSPGFLPTLYGGIVKVHKIPYFKGKCLNKAKFHITVGHETVMGKLQFFGKPPSDNDHVDEE----QFSTDTEYEFQEELNEKTQTKLANTNDR--------------ETQYVMIEFDHPVIGQADSLVIGSRLDTDINLNTCRLAFYGRIVLPFLSRDYQKEELPKLKIFKWKSKEGTVERMADEYSVIVKSLFKKETNLALFTNMKVKLSSGDEGTIEGSFGQSGKIKVRIPKGLADSTKERLSTTKK-----GKGKQA-NESGGEAKEP---IKVLLEFKKYIYDSSHKMIQT 569
            +N N+GVLGH+DSGKT+L++ALS  ASTAAFDK PQS+ERGITLDLGFS F V  P  L+ S                  LQ TLVDCPGHASLI+TIIGGAQIID+MMLV+DV KGMQTQ+AECLVIG+I C+K+VVVLNK+DL+PE KRQA I+KMTK+M KTLENTKF  + +I VAA  G  E        G+ +LI  L SQ  IPTR+P G  L SVDHCFSI+GQGTVMTGT+L+GS+S+ D+VEIP LK  KKVKSMQMF  P+ S +QGDR GICVTQFDPK LERG+VC+P  L T++  ++ V KIPYF+G    KAKFHITVGHETVMG+L FF   P   D+ D+E     F+   EY FQE+   K  T     ND                 Q+ ++EF+ PV      LVIGSRLD DI+ NTCRLAF+G ++     R+Y    LP+LK++K K K G VER  D+YSVI +SLFKKETN+ LF  +KV LS+G+ G I+ +FGQSGK K+ IP GL+  +K+ L+   K     G+G+    E   E  EP   + + L FK+Y++D+  +M+Q+
Sbjct:    6 VNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAP---DNFDQEPILDSFNFSQEYLFQEQYLSKDLTPAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDADIHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVERAMDDYSVIGRSLFKKETNIQLFVGLKVHLSTGELGIIDSAFGQSGKFKIHIPGGLSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSLTFKRYVFDTHKRMVQS 595
The following BLAST results are available for this feature:
BLAST of TCONS_00045614-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SELB0.000e+054.30Selenocysteine-specific elongation factor OS=Homo ... [more]
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