TCONS_00045600-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045600-protein
Unique NameTCONS_00045600-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045600-protein ID=TCONS_00045600-protein|Name=TCONS_00045600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MASLMRPSLINPLKAATRSIQTSAPVGVTKSFKIYRWDPEKPGDKPKLQN
YDVDMDNCGPMVLDALLKIKNEQDPTLTFRRSCREGICGSCAMNINGTNT
LACLCKIDTSSKKNVKIYPLPHMYVVKDLVPDMSNFYEQYRYIEPYLKRD
TPAPDGKEHIQSIKDRAKLDGLYECILCACCSTSCPSYWWHGDKYLGPAV
LMQAYRWMIDSRDEHQQERLDRLNNKYSVYKCHTIMNCTRTCPKGLNPGL
AIGEVKKMIAQSN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029157XLOC_029157Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045600TCONS_00045600Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025192Succ_DH/fum_Rdtase_N
IPR012675Beta-grasp_dom
IPR004489Succ_DH/fum_Rdtase_Fe-S
IPR0179004Fe4S_Fe_S_CS
IPR0060582Fe2S_fd_BS
IPR0178964Fe4S_Fe-S-bd
IPR0010412Fe-2S_ferredoxin-type
IPR009051Helical_ferredxn
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron carrier activity
GO:0016491oxidoreductase activity
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006099tricarboxylic acid cycle
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006099 tricarboxylic acid cycle
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0016491 oxidoreductase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025192Succinate dehydogenase/fumarate reductase N-terminalPFAMPF13085Fer2_3coord: 32..137
e-value: 3.8E-36
score: 123.3
IPR012675Beta-grasp domainGENE3D3.10.20.30coord: 20..132
e-value: 1.1E-39
score: 134.3
IPR004489Succinate dehydrogenase/fumarate reductase iron-sulphur proteinTIGRFAMTIGR00384TIGR00384coord: 34..256
e-value: 2.8E-86
score: 286.5
NoneNo IPR availablePFAMPF13534Fer4_17coord: 174..247
e-value: 8.9E-10
score: 38.9
NoneNo IPR availableGENE3D1.10.1060.10coord: 133..263
e-value: 1.8E-31
score: 108.0
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved sitePROSITEPS001984FE4S_FER_1coord: 175..186
IPR0060582Fe-2S ferredoxin, iron-sulphur binding sitePROSITEPS001972FE2S_FER_1coord: 83..91
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPROSITEPS513794FE4S_FER_2coord: 165..195
score: 7.508
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainPROSITEPS510852FE2S_FER_2coord: 30..123
score: 9.764
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainCDDcd00207fer2coord: 62..106
e-value: 6.90626E-4
score: 35.8336
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainSUPERFAMILY542922Fe-2S ferredoxin-likecoord: 29..132
IPR009051Alpha-helical ferredoxinSUPERFAMILY46548alpha-helical ferredoxincoord: 133..261

Blast
[Close]
BLAST of TCONS_00045600-protein vs. Swiss-Prot (Human)
Match: SDHB (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Homo sapiens GN=SDHB PE=1 SV=3)

HSP 1 Score: 385.185 bits (988), Expect = 2.989e-136
Identity = 178/247 (72.06%), Postives = 209/247 (84.62%), Query Frame = 0 
Query:   16 ATRSIQTSAPVG-VTKSFKIYRWDPEKPGDKPKLQNYDVDMDNCGPMVLDALLKIKNEQDPTLTFRRSCREGICGSCAMNINGTNTLACLCKIDTSSKKNVKIYPLPHMYVVKDLVPDMSNFYEQYRYIEPYLKRDTPAPDGK-EHIQSIKDRAKLDGLYECILCACCSTSCPSYWWHGDKYLGPAVLMQAYRWMIDSRDEHQQERLDRLNNKYSVYKCHTIMNCTRTCPKGLNPGLAIGEVKKMIA 260
            A+R  QT+A      K F IYRWDP+K GDKP +Q Y+VD++ CGPMVLDAL+KIKNE D TLTFRRSCREGICGSCAMNING NTLAC  +IDT+  K  KIYPLPHMYV+KDLVPD+SNFY QY+ IEPYLK+   + +GK +++QSI++R KLDGLYECILCACCSTSCPSYWW+GDKYLGPAVLMQAYRWMIDSRD+  +ERL +L + +S+Y+CHTIMNCTRTCPKGLNPG AI E+KKM+A
Sbjct:   25 ASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYEVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMA 271
The following BLAST results are available for this feature:
BLAST of TCONS_00045600-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SDHB2.989e-13672.06Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
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