TCONS_00044561-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00044561-protein
Unique NameTCONS_00044561-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length168

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00044561-protein ID=TCONS_00044561-protein|Name=TCONS_00044561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MATHPKTGIRIGNKPSAIELLIFVWIFSLFCQEVKQMKNMGKKQYFGSGW
NWIDINMIGLVFVSYSMWVIMYFVNPEHKDDHYTFILSFPESFFAVAIIL
SYFRMVCLCQITRYLGLLQLCLGRMLQVLFQFAFISIVILCSFSVGLVFL
FHSSKHYDSMVVKMSXQS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_028180XLOC_028180Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00044561TCONS_00044561Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 19..153
e-value: 2.7E-12
score: 46.3
NoneNo IPR availableGENE3D1.10.287.70coord: 12..164
e-value: 1.6E-5
score: 23.9

Blast
[Close]
BLAST of TCONS_00044561-protein vs. Swiss-Prot (Human)
Match: TRPC4 (Short transient receptor potential channel 4 OS=Homo sapiens GN=TRPC4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.394e-18
Identity = 48/148 (32.43%), Postives = 76/148 (51.35%), Query Frame = 0 
Query:   10 RIGNKPSAIELLIFVWIFSLFCQEVKQMKNMGKKQYFGSGWNWIDINMIGLVFVSYSMWVIMYF----VNPEHKDD--HYTFILSFPESFFAVAIILSYFRMVCLCQITRYLGLLQLCLGRMLQVLFQFAFISIVILCSFSVGLVFLF 151
            R G  P+ +E +I  W+      E+KQM + G + Y    WN +D  M  L   + S+ ++ +     +NP    D  H T +    E+ FA+A I S  R++ L     +LG LQ+ LGRML  + +F FI  ++L +F+ GL  L+
Sbjct:  394 RQGPPPTIVEWMILPWVLGFIWGEIKQMWDGGLQDYIHDWWNLMDFVMNSLYLATISLKIVAFVKYSALNPRESWDMWHPTLV---AEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLY 538
The following BLAST results are available for this feature:
BLAST of TCONS_00044561-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRPC42.394e-1832.43Short transient receptor potential channel 4 OS=Ho... [more]
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