TCONS_00044475-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00044475-protein
Unique NameTCONS_00044475-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00044475-protein ID=TCONS_00044475-protein|Name=TCONS_00044475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
MVLMNSGKLKKVSEFNDDGNSLEARLMRVSIIDGVDSKFGFDRYKEAIDK
VGWLINMKPTEIQDEEKKLISAVDYYFVQDDGNRFKATIPFKPYFYIAAR
KGSERELATFLNKKFSGMIAGIEMLDKEDLDLHNHLTGLKKTYVKLSFHN
VKELLKIKGQLMPIVRKNKEREKANATVALVTGESSKAPSSSKSDQMDNI
LDIREYDVPYYVRVSIDTKISVGHWYTVKVRGITHVEITERTDLLHRPDP
VVMAFDIETTKLPLKFPDSAIDSIMMISYMIDGQGYLITNREIISEDIED
FEYTPRPEYEGPIIVFNEPDEAALLRRWFDHIAETKPMIYVTYNGDFFDW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_028106XLOC_028106Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00044475TCONS_00044475Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR006133DNA-dir_DNA_pol_B_exonuc
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:00084083'-5' exonuclease activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 251..350
e-value: 2.5E-19
score: 69.1
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 73..164
coord: 198..350
IPR006133DNA-directed DNA polymerase, family B, exonuclease domainPFAMPF03104DNA_pol_B_exo1coord: 78..350
e-value: 1.7E-69
score: 234.5
NoneNo IPR availableGENE3D3.30.342.10coord: 59..245
e-value: 7.3E-31
score: 106.6

Blast
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BLAST of TCONS_00044475-protein vs. Swiss-Prot (Human)
Match: DPOE1 (DNA polymerase epsilon catalytic subunit A OS=Homo sapiens GN=POLE PE=1 SV=5)

HSP 1 Score: 454.907 bits (1169), Expect = 8.472e-146
Identity = 219/348 (62.93%), Postives = 274/348 (78.74%), Query Frame = 0 
Query:   17 DDG--NSLEA--RLMRVSIIDGVDSKFGFDRYKEAIDKVGWLINMKPTEIQDEEKKLISAVDYYFVQDDGNRFKATIPFKPYFYIAARKGSERELATFLNKKFSGMIAGIEMLDKEDLDLHNHLTGLKKTYVKLSFHNVKELLKIKGQLMPIVRKNKEREKAN-ATVALVT------GESSKAPSSSK--SDQMDNILDIREYDVPYYVRVSIDTKISVGHWYTVKVRGITH-VEITERTDLLHRPDPVVMAFDIETTKLPLKFPDSAIDSIMMISYMIDGQGYLITNREIISEDIEDFEYTPRPEYEGPIIVFNEPDEAALLRRWFDHIAETKPMIYVTYNGDFFDW 350
            DDG  +S+ A  RL R    D +D +FGF+R KE  +K GWLINM PTEI DE+K+L SAVDYYF+QDDG+RFK  +P+KPYFYIA RKG ERE+++FL+KKF G IA +E + KEDLDL NHL GLK+ Y++LSFH V++L+K++ ++ P V+KN+E++ A+ A  AL++      G  +    +SK  +DQ+DNI+D+REYDVPY++R+SID KI V HWY V+ RG    VEIT R DL+ RPDPVV+AFDIETTKLPLKFPD+  D IMMISYMIDGQGYLITNREI+SEDIEDFE+TP+PEYEGP  VFNEPDEA L++RWF+H+ ETKP I VTYNGDFFDW
Sbjct:   22 DDGATSSVSALKRLERSQWTDKMDLRFGFERLKEPGEKTGWLINMHPTEILDEDKRLGSAVDYYFIQDDGSRFKVALPYKPYFYIATRKGCEREVSSFLSKKFQGKIAKVETVPKEDLDLPNHLVGLKRNYIRLSFHTVEDLVKVRKEISPAVKKNREQDHASDAYTALLSSVLQRGGVITDEEETSKKIADQLDNIVDMREYDVPYHIRLSIDLKIHVAHWYNVRYRGNAFPVEITRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEGPFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDW 369
The following BLAST results are available for this feature:
BLAST of TCONS_00044475-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOE18.472e-14662.93DNA polymerase epsilon catalytic subunit A OS=Homo... [more]
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