TCONS_00044174-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00044174-protein
Unique NameTCONS_00044174-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00044174-protein ID=TCONS_00044174-protein|Name=TCONS_00044174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
ACDAYAKRKVNPCNISKEDSEKRASFAVKPVKVVIEPLKKQSLAATTLPS
IGCHTKQNISRHKHHQTTVSIRTGTDCMQRRNKPKKNPKSLTSSPYFKNT
GNGDGLRGTFKKFQAKKCKNEMGSYRSTKVCGLHQTITFVPPQSPYSLVQ
ENLYQKPWQLLIATIFLNKTTGSAALPIFWKFVEKYSEPESVLMANPVEI
TSKXKFVEKYSEPESVLMANPVEITSKFKILSLRMSK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_027820XLOC_027820Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00044174TCONS_00044174Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011257DNA_glycosylase
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0003824 catalytic activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.340.30coord: 133..236
e-value: 9.8E-13
score: 47.7
IPR011257DNA glycosylaseSUPERFAMILY48150DNA-glycosylasecoord: 142..201

Blast
[Close]
BLAST of TCONS_00044174-protein vs. Swiss-Prot (Human)
Match: MBD4 (Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.767e-18
Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = 0 
Query:  139 FVPPQSPYSLVQENLYQKPWQLLIATIFLNKTTGSAALPIFWKFVEKYSEPESVLMANPVEIT 201
            + PP+SP++LVQE L+  PW+LLIATIFLN+T+G  A+P+ WKF+EKY   E    A+  +++
Sbjct:  438 WTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVS 500
The following BLAST results are available for this feature:
BLAST of TCONS_00044174-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MBD48.767e-1850.79Methyl-CpG-binding domain protein 4 OS=Homo sapien... [more]
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