TCONS_00043965-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00043965-protein
Unique Name	TCONS_00043965-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	266

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00043965-protein ID=TCONS_00043965-protein|Name=TCONS_00043965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
VDGDWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQN
CNTFPCPIHGEWGQWSNWTDCDKPCGVGFQNRSRVCDDPAPAHGGDDCVG
TLTSQRQICNVHYCPEMCDEFFKMCDCIDVPVIYDMSILTTNSSFYGIND
TAVNSSLDAISTWDAEAVKLACKNAQCSETSLQSAITQIEADVNTLQSFI
DDASSSIKLTRKVISCKANVWGRRGELFEHYQILFKKKVIVRQVYQDLEI
KKRILEKEKLRCADRS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_027627	XLOC_027627	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00043965	TCONS_00043965	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000884	TSP1_rpt

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01705	TSP1REPEAT	coord: 21..32 score: 48.29 coord: 40..51 score: 36.24 coord: 3..16 score: 38.97
IPR000884	Thrombospondin type-1 (TSP1) repeat	SMART	SM00209	TSP1_2	coord: 62..115 e-value: 1.7E-13 score: 60.9 coord: 5..57 e-value: 1.5E-12 score: 57.7
IPR000884	Thrombospondin type-1 (TSP1) repeat	GENE3D	2.20.100.10		coord: 1..56 e-value: 4.8E-16 score: 58.3
IPR000884	Thrombospondin type-1 (TSP1) repeat	GENE3D	2.20.100.10		coord: 58..115 e-value: 6.9E-16 score: 57.9
IPR000884	Thrombospondin type-1 (TSP1) repeat	PFAM	PF00090	TSP_1	coord: 7..56 e-value: 2.4E-11 score: 43.6 coord: 64..114 e-value: 5.4E-11 score: 42.4
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 59..115 score: 12.832
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 2..57 score: 13.276
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 55..114
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 1..53

Blast

[Close]

BLAST of TCONS_00043965-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 5.196e-35
Identity = 57/115 (49.57%), Postives = 72/115 (62.61%), Query Frame = 0

Query:    1 VDGDWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTDCDKPCGVGFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNVHYCP 115
            VDG W+ W+ W  C+  CG G+Q+RTRTC NP+ +HGG PC G+  E   CN  PCP+HG W  W  W  C + CG G Q R+R+C++P PA GG  C G  T Q Q+CN   CP
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAET-QMQVCNERNCP 4698

HSP 2 Score: 120.553 bits (301), Expect = 1.014e-30
Identity = 52/115 (45.22%), Postives = 68/115 (59.13%), Query Frame = 0

Query:    1 VDGDWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTDCDKPCGVGFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNVHYCP 115
            + G W  WA+W+ CS+ CG G++ RTR C++P P++GG  C G   +S  CN+ PCP HG W  WS W  C + C  G   R R CD+P P++GG  C G   SQ Q CN   CP
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC-GGPDSQIQRCNTDMCP 4812

HSP 3 Score: 117.087 bits (292), Expect = 1.778e-29
Identity = 75/235 (31.91%), Postives = 103/235 (43.83%), Query Frame = 0

Query:    3 GDWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTDCDKPCGVGFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNVHYCPEMCDEFFKMCDCIDVPVIYDMSILTTNSSFYGINDTAVNSSLDAISTWDAEAVKLACKNAQCSETSLQSAITQIEADVN----TLQSFIDDASSSIKLTRKVISCKANVWGRRGELFEHYQI 233
            G+W+ W+ W TCS  C  G   R RTC NP P +GG  C G  ++ Q CNT  CP+ G WG W +W+ C   CG G + R R+CD P P  GG  C G  T+Q   CNV  CP                      I   N   +GI    +N+++      D   ++    N      SL SA+ +I + +N    T    I +A +   LT  V   +  V    GE+ +   I
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGD-TTQVTRCNVQACPGGPQRARGSV------------IGNINDVEFGI--AFLNATITDSPNSDTRIIRAKITNV---PRSLGSAMRKIVSILNPIYWTTAKEIGEAVNGFTLTNAVFKRETQVEFATGEILQMSHI 4974

HSP 4 Score: 116.316 bits (290), Expect = 3.151e-29
Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = 0

Query:    1 VDGDWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTDCDKPCGVGFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNVHYCP 115
            V G ++ W+ W  CS+ CG G Q R+R C  P P +GG PC G   E +NC   PCP+ G W +WS W +C + CG G Q R+R C++P+  HGG  C G    +  +CN+  CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAV-EIIMCNIRPCP 4641

HSP 5 Score: 116.316 bits (290), Expect = 3.305e-29
Identity = 53/115 (46.09%), Postives = 66/115 (57.39%), Query Frame = 0

Query:    1 VDGDWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTDCDKPCGVGFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNVHYCP 115
            V G W+ W  W TCS  CG G+Q+R R C NP P  GG+ C G  T+ Q CN   CPIHG+W  W++W+ C   CG G + R+R C DP P +GG  C G+   Q   CN   CP
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGS-DVQSDFCNSDPCP 4755

The following BLAST results are available for this feature:

BLAST of TCONS_00043965-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00043965-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMCN1	5.196e-35	49.57	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

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TCONS_00043965-protein (polypeptide) - C. hemisphaerica