TCONS_00043858-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00043858-protein
Unique Name	TCONS_00043858-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	419

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00043858-protein ID=TCONS_00043858-protein|Name=TCONS_00043858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
MRSLLTHPVPMAALTATATTKLTKAVINSLGLNSPKIIRKIPNKDNIRYF
VLKSEIKDPSLIFKNYVNDMMLNGYKSKKVLVFARRVDQSTLIFDAFNDA
MKDKYKNFKTRPYAKYTAETDPDVLDWVLNSFSAADGKVRFLVASVAFGM
GVDCKGLHSVIHYGPPCSLDDYFQQSGRAGRDGQKSQAIIIKYPHSCASP
KIDKEMKDYCSTKEVCRRKTLLSQYSTSQLKPLEKQHDCCDICQQQCSCG
NCDAICTVHDLVLFKPNEKQKPSCILNAHGREILRNSLLSLRQQYSDSQS
SKGVLLNNDLTSGFPLSSIEEIIDISNHSFDESYITLFTSLFNMDVIPKV
VYIVQNVLKQHDLLCQETAASKSFNDSEYNRIGSEPDIEESDTDTDIRAG
SMHDDSFSSDNSSLSSSDF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_027528	XLOC_027528	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00043858	TCONS_00043858	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR027417	P-loop_NTPase

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 99..183 e-value: 5.5E-14 score: 62.5
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 76..182 e-value: 3.3E-13 score: 49.9
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 66..234 score: 13.92
None	No IPR available	GENE3D	3.40.50.300		coord: 44..247 e-value: 9.2E-25 score: 86.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 376..419
None	No IPR available	CDD	cd00079	HELICc	coord: 46..191 e-value: 1.21225E-18 score: 80.3596
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 65..196

Blast

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BLAST of TCONS_00043858-protein vs. Swiss-Prot (Human)
Match: BLM (Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.327e-18
Identity = 71/265 (26.79%), Postives = 115/265 (43.40%), Query Frame = 0

Query:    9 VPMAALTATATTKLTKAVINSLGLNSPKIIRKIPNKDNIRYFVLKSEIKDPSLIFKNYVNDMMLNGYKSKKVLVFARRVDQSTLIFDAFNDAMKDKYKNFKTRPYAKYTAETDPDVLDWVLNSFSAADGKVRFLVASVAFGMGVDCKGLHSVIHYGPPCSLDDYFQQSGRAGRDGQKSQAIIIKYPHSCASPK----IDKE---------------MKDYCSTKEVCRRKTLLSQYSTSQLKPLEKQHDCCDICQQQ--CSCGNC 252
            VP+ ALTATA  ++ K ++  L +  P++     N+ N++Y+VL  + K  +     ++     + Y S  +   +RR            D M D  +       A +   +D    D V   +   DG  + + A++AFGMG+D   +  VIH   P S++ Y+Q+SGRAGRDG+ S  ++    H     K    ++K+               M  YC     CRR  LL+ +  +   P        D C++    SC NC
Sbjct:  824 VPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKH--HPYDSGIIYCLSRRE----------CDTMADTLQRDGLAALAYHAGLSD-SARDEVQQKWINQDG-CQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNP--------DFCKKHPDVSCDNC 1066

The following BLAST results are available for this feature:

BLAST of TCONS_00043858-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00043858-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
BLM	7.327e-18	26.79	Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1...	[more]

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TCONS_00043858-protein (polypeptide) - C. hemisphaerica