TCONS_00043372-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00043372-protein
Unique Name	TCONS_00043372-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	225

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00043372-protein ID=TCONS_00043372-protein|Name=TCONS_00043372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
FIGQRNDDNVYSFESDIAIDNINLNEGNCSGPIDGRYTEWSSWGMCDQAC
GMGKQNRTRYCTNPAPMNGGSWCMGEHMQNQTCKIKDCDRNGEWSAWTEW
GPCDKSCGGGNKTRYRECHNPPPMGNGLQCLLNGSSTERSMIDMDVQTCN
DIICDRDGGWNAWAVAVECSVECGNGTKVSLRNCTNPVPLGGGKQCPMEK
KLYNLTMYALQDRREEPCYAGECLT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_027077	XLOC_027077	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00043372	TCONS_00043372	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000884	TSP1_rpt

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01705	TSP1REPEAT	coord: 53..64 score: 46.13 coord: 72..83 score: 29.02 coord: 35..48 score: 35.46
IPR000884	Thrombospondin type-1 (TSP1) repeat	SMART	SM00209	TSP1_2	coord: 94..155 e-value: 1.0E-13 score: 61.6 coord: 160..224 e-value: 0.0021 score: 27.3 coord: 37..89 e-value: 8.5E-11 score: 51.9
IPR000884	Thrombospondin type-1 (TSP1) repeat	PFAM	PF00090	TSP_1	coord: 95..136 e-value: 2.0E-9 score: 37.4 coord: 39..88 e-value: 9.5E-9 score: 35.2 coord: 160..200 e-value: 0.0023 score: 18.0
IPR000884	Thrombospondin type-1 (TSP1) repeat	GENE3D	2.20.100.10		coord: 33..88 e-value: 1.5E-14 score: 53.5 coord: 156..223 e-value: 9.9E-10 score: 38.1 coord: 90..154 e-value: 6.5E-14 score: 51.5
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 91..155 score: 11.641
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 34..89 score: 11.793
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 157..224 score: 9.106
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 91..132
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 33..83
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 157..197

Blast

[Close]

BLAST of TCONS_00043372-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 4.880e-38
Identity = 71/165 (43.03%), Postives = 95/165 (57.58%), Query Frame = 0

Query:   32 PIDGRYTEWSSWGMCDQACGMGKQNRTRYCTNPAPMNGGSWCMGEHMQNQTCKIKDCDRNGEWSAWTEWGPCDKSCGGGNKTRYRECHNPPPMGNGLQCLLNGSSTERSMIDMDVQTCNDIICDRDGGWNAWAVAVECSVECGNGTKVSLRNCTNPVPLGGGKQC 196
            P+DG ++EWS W  C ++CG G Q RTR C NP+  +GG  C G  ++   C I+ C  +G WSAW  WG C +SCG G +TR R C+NPPP   G  C  +G+ T+       +Q CN+  C   G W  WA    CSV CG G +   R C++PVP  GG++C
Sbjct: 4584 PVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC--DGAETQ-------MQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKC 4739

HSP 2 Score: 139.813 bits (351), Expect = 6.390e-38
Identity = 72/173 (41.62%), Postives = 92/173 (53.18%), Query Frame = 0

Query:   25 NEGNCSGPIDGRYTEWSSWGMCDQACGMGKQNRTRYCTNPAPMNGGSWCMGEHMQNQTCKIKDCDRNGEWSAWTEWGPCDKSCGGGNKTRYRECHNPPPMGNGLQCLLNGSSTERSMIDMDVQTCNDIICDRDGGWNAWAVAVECSVECGNGTKVSLRNCTNPVPLGGGKQCP 197
            NE NC  PI G++  W+SW  C  +CG G + RTR C++P P  GG  C G  +Q+  C    C  +G WS W+ WG C ++C GG   RYR C NPPP   G  C   G        D  +Q CN  +C  DG W +W    +CS  CG G K   R C +PVP+ GG+ CP
Sbjct: 4693 NERNC--PIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC--GGP-------DSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCP 4854

HSP 3 Score: 121.709 bits (304), Expect = 1.064e-31
Identity = 65/164 (39.63%), Postives = 84/164 (51.22%), Query Frame = 0

Query:   33 IDGRYTEWSSWGMCDQACGMGKQNRTRYCTNPAPMNGGSWCMGEHMQNQTCKIKDCDRNGEWSAWTEWGPCDKSCGGGNKTRYRECHNPPPMGNGLQCLLNGSSTERSMIDMDVQTCNDIICDRDGGWNAWAVAVECSVECGNGTKVSLRNCTNPVPLGGGKQC 196
            + G +++WS+W  C   CG G Q R+R C  P P NGG  C G  ++ + C+ K C  +G WS W+ W  C +SCG GN+TR R C+NP     G  C   G++ E  M       CN   C   G W+AW     CS  CG GT+   R C NP P  GG  C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPC--EGNAVEIIM-------CNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC 4682

The following BLAST results are available for this feature:

BLAST of TCONS_00043372-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00043372-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMCN1	4.880e-38	43.03	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

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TCONS_00043372-protein (polypeptide) - C. hemisphaerica