TCONS_00043370-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043370-protein
Unique NameTCONS_00043370-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length154

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043370-protein ID=TCONS_00043370-protein|Name=TCONS_00043370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
IVNGQWSSWSRMTPCTKTCGFGSTQRTRTCTAPAPRHGGRDCVGTPIEII
EGCNPYPCPVNGGFGDWIQSDYCTQPCGLGGVIPFRRFCDNPKPKYRGGG
CQGSNYRTIPCNEHIRCNESISVTFISKLLDLDWYYTMVYKDHHHFIDVR
DQLT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_027075XLOC_027075Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043370TCONS_00043370Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 6..59
e-value: 2.7E-7
score: 40.2
coord: 64..118
e-value: 0.5
score: 11.9
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 2..58
e-value: 1.2E-13
score: 50.7
coord: 60..117
e-value: 2.0E-6
score: 27.5
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 7..58
e-value: 6.6E-9
score: 35.8
coord: 66..113
e-value: 0.026
score: 14.6
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 3..59
score: 12.195
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 2..58
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 60..112

Blast
[Close]
BLAST of TCONS_00043370-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.641e-23
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 0 
Query:    2 VNGQWSSWSRMTPCTKTCGFGSTQRTRTCTAPAPRHGGRDCVGTPIEIIEGCNPYPCPVNGGFGDWIQSDYCTQPCGLGGVIPFRRFCDNPKPKYRGGGCQGSNYRTIPCNE 113
            V+G WS WS    CT++CG G+  RTRTC  P+ +HGGR C G  +EII  CN  PCPV+G +  W     C++ CG  G     R C+NP P + G  C G+  +   CNE
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIM-CNIRPCPVHGAWSAWQPWGTCSESCG-KGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNE 4694

HSP 2 Score: 80.4925 bits (197), Expect = 2.171e-18
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 0 
Query:    2 VNGQWSSWSRMTPCTKTCGFGSTQRTRTCTAPAPRHGGRDCVGTPIEIIEGCNPYPCPVNGGFGDWIQSDYCTQPCGLGGVIPFRRFCDNPKPKYRGGGCQGSNYRTIPCN 112
            ++G+W++W+  + C+ +CG G+ QRTR C+ P P++GGR C G+ ++  + CN  PCP +G +  W     C++ C  GG +   R CDNP P   G  C G + +   CN
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQ-SDFCNSDPCPTHGNWSPWSGWGTCSRTCN-GGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCN 4807

HSP 3 Score: 79.337 bits (194), Expect = 6.159e-18
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 0 
Query:    2 VNGQWSSWSRMTPCTKTCGFGSTQRTRTCTAPAPRHGGRDCVGTPIEIIEGCNPYPCPVNGGFGDWIQSDYCTQPCGLGGVIPFRRFCDNPKPKYRGGGCQGSNYRTIPCN 112
            V+G +S WS    C+ TCG G  +R+R C  P P +GG+ C G+ +E +  C   PCPV+G + +W   + CT+ CG G      R C+NP  ++ G  C+G+    I CN
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLE-MRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQT-RTRTCNNPSVQHGGRPCEGNAVEIIMCN 4636

HSP 4 Score: 77.7962 bits (190), Expect = 1.924e-17
Identity = 45/110 (40.91%), Postives = 57/110 (51.82%), Query Frame = 0 
Query:    3 NGQWSSWSRMTPCTKTCGFGSTQRTRTCTAPAPRHGGRDCVGTPIEIIEGCNPYPCPVNGGFGDWIQSDYCTQPCGLGGVIPFRRFCDNPKPKYRGGGCQGSNYRTIPCN 112
            +G WS WS    C++TC  G  +R RTC  P P +GGR C G P   I+ CN   CPV+G +G W     C+  CG GG    +R CD+P P   G  C G   +   CN
Sbjct: 4757 HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC-GGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCG-GGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCN 4864

HSP 5 Score: 74.3294 bits (181), Expect = 3.011e-16
Identity = 40/111 (36.04%), Postives = 59/111 (53.15%), Query Frame = 0 
Query:    2 VNGQWSSWSRMTPCTKTCGFGSTQRTRTCTAPAPRHGGRDCVGTPIEIIEGCNPYPCPVNGGFGDWIQSDYCTQPCGLGGVIPFRRFCDNPKPKYRGGGCQGSNYRTIPCN 112
            V+G WS+W     C+++CG G+  R R C  P P  GG  C G   ++ + CN   CP++G +  W     C+  CG GG     R C +P P+Y G  C+GS+ ++  CN
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQM-QVCNERNCPIHGKWATWASWSACSVSCG-GGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCN 4750
The following BLAST results are available for this feature:
BLAST of TCONS_00043370-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN12.641e-2343.75Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
back to top