TCONS_00043266-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043266-protein
Unique NameTCONS_00043266-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043266-protein ID=TCONS_00043266-protein|Name=TCONS_00043266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MAEAGEENEAHVQAKLVTKLKKFQTQDAPFSLPIHTGSNELNSLLTSLLQ
GEESKEETLNFDFLINGEFLRSNLKDFIEANNLLTESEIEIEYILKEDEP
ELSQTLQHDDWISGIDINNNDLILTASYDNTLSIWNLSGECIFNIEGHGM
AVKDACWINDKTFISASQDQTILMWELNNVNKTAPDCVNVCRGHAASVDC
LAISQNKLKFASGSWDKMIKIWDSKVDRSLVENGVDEEDPKKQKLSDKLK
AAPTSRTPLVTLSGHKEPVSDLFWKTNEELVSVGWDHCIRMWDVNTGINS
QTIQANKVILSTX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026979XLOC_026979Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043266TCONS_00043266Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR012972NLE
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 210..224
score: 38.22
coord: 123..137
score: 33.01
coord: 163..177
score: 32.12
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 184..223
e-value: 8.1E-8
score: 42.0
coord: 255..293
e-value: 1.6E-5
score: 34.3
coord: 99..136
e-value: 6.7E-6
score: 35.6
coord: 138..176
e-value: 6.9E-6
score: 35.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 139..175
e-value: 0.0066
score: 17.2
coord: 257..293
e-value: 4.1E-4
score: 21.0
coord: 186..223
e-value: 2.9E-7
score: 31.0
coord: 105..136
e-value: 0.07
score: 13.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 191..232
score: 12.346
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 262..302
score: 11.578
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 145..185
score: 9.673
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 105..138
score: 9.74
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 247..308
e-value: 3.7E-8
score: 32.4
NoneNo IPR availableGENE3D2.40.50.140coord: 18..129
e-value: 1.1E-4
score: 21.3
NoneNo IPR availableGENE3D1.10.10.670coord: 173..246
e-value: 5.6E-14
score: 51.3
coord: 130..172
e-value: 1.4E-12
score: 46.9
IPR012972NLEPFAMPF08154NLEcoord: 12..78
e-value: 1.7E-15
score: 57.2
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 123..137
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 280..294
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 105..302
score: 20.382
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 253..305
coord: 105..223

Blast
[Close]
BLAST of TCONS_00043266-protein vs. Swiss-Prot (Human)
Match: WDR12 (Ribosome biogenesis protein WDR12 OS=Homo sapiens GN=WDR12 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.506e-65
Identity = 128/312 (41.03%), Postives = 177/312 (56.73%), Query Frame = 0 
Query:   10 AHVQAKLVTKLKKFQTQDAPFSLPIHTGSNELNSLLTSLLQGEESKEETLNFDFLINGEFLRSNLKDFIEANNLLTESEIEIEYILKEDEPELSQTLQHDDWISGIDINNNDLILTASYDNTLSIWNLSGECIFNIEGHGMAVKDACWIND----KTFISASQDQTILMWELNNVNKTAPDCVNVCRGHAASVDCLAISQNKLKFASGSWDKMIKIWDSKVDRSLVENGVDEED--------PKKQKLSDKLKAAPTSRTPLVTLSGHKEPVSDLFWKTNEELVSVGWDHCIRMWDVNTGINSQTIQANKVI 309
            A +Q +  T  KK+   D PFS+P  +   +L++++  LL+ +    + + FDFLI G+FLR  L   +E  N+ +E  +EIEY+ K   P+  Q + HDDWIS I     + ILT SYD T  IW+L G+ I  I GH   VKD  W+         +SAS DQTIL+WE  NV +     ++ CRGHA SVD +A+  +  KF SGSWDKM+KIW +           DEED        P+K++ +++L     +RTP+VTLSGH E VS + W   EE+ S  WDH IR+WDV +G    T+  NKV 
Sbjct:    2 AQLQTRFYTDNKKYAVDDVPFSIPAASEIADLSNIINKLLKDKNEFHKHVEFDFLIKGQFLRMPLDKHMEMENISSEEVVEIEYVEKYTAPQPEQCMFHDDWISSIK-GAEEWILTGSYDKTSRIWSLEGKSIMTIVGHTDVVKDVAWVKKDSLSCLLLSASMDQTILLWEW-NVERNKVKALHCCRGHAGSVDSIAVDGSGTKFCSGSWDKMLKIWSTV--------PTDEEDEMEESTNRPRKKQKTEQLGL---TRTPIVTLSGHMEAVSSVLWSDAEEICSASWDHTIRVWDVESGSLKSTLTGNKVF 300
The following BLAST results are available for this feature:
BLAST of TCONS_00043266-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR121.506e-6541.03Ribosome biogenesis protein WDR12 OS=Homo sapiens ... [more]
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