TCONS_00042780-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00042780-protein
Unique NameTCONS_00042780-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042780-protein ID=TCONS_00042780-protein|Name=TCONS_00042780-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MTHLQIFLKSSMNDIKNKVQVDKSKKKKQSLSIENIVSNLKQTIHQAYIP
SSNNENGLIGESSDIKEENCKVCGKSFLKGDTTREDDRSYESFCCNECTD
LTEEITVIQQEAPRIHSFAPEIPFIPSEIPLITPEVPLVCNNQLDSGINE
SVKTLSIEICRKCGEPFTLKQSFESRIGVGAFLVSECGNCFAKKRQLQES
YELPRPFVCDVCSKSFARKSDFERHQDIHTGIKKFHCDDCGKSFHRNSNL
KRHKQTHLVTKEYKCSVCKGNFTRKKYLENHEREKHKFLTL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026579XLOC_026579Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042780TCONS_00042780Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013088Znf_NHR/GATA
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 207..229
e-value: 0.001
score: 28.4
coord: 263..286
e-value: 0.03
score: 23.5
coord: 235..257
e-value: 0.0024
score: 27.1
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 237..257
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 265..286
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 209..229
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 207..234
score: 13.838
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 235..262
score: 13.921
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 263..286
score: 10.201
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 205..257
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 243..286
NoneNo IPR availableGENE3D3.30.160.60coord: 226..248
e-value: 5.1E-16
score: 57.9
NoneNo IPR availableGENE3D3.30.160.60coord: 249..289
e-value: 5.4E-14
score: 51.8
NoneNo IPR availableGENE3D2.20.28.30coord: 20..75
e-value: 0.3
score: 10.9
NoneNo IPR availableGENE3D2.20.25.10coord: 194..211
e-value: 0.37
score: 10.4
NoneNo IPR availableGENE3D3.30.160.60coord: 212..225
e-value: 1.1E-10
score: 41.0
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 263..286
e-value: 0.01
score: 16.1
coord: 235..257
e-value: 3.1E-5
score: 24.1
coord: 207..229
e-value: 1.0E-5
score: 25.6
NoneNo IPR availableGENE3D2.20.28.10coord: 158..193
e-value: 0.081
score: 12.7
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 76..106
e-value: 3.8E-4
score: 19.6

Blast
[Close]
BLAST of TCONS_00042780-protein vs. Swiss-Prot (Human)
Match: ZN549 (Zinc finger protein 549 OS=Homo sapiens GN=ZNF549 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 8.875e-25
Identity = 78/246 (31.71%), Postives = 113/246 (45.93%), Query Frame = 0 
Query:   70 CKVCGKSFLK-----GDTTREDDRSYESFCCNECT-DLTEEITVIQQ------EAPRI-----HSFAPEIPFIPSEIPLITPEVPLVCNNQLDSGINESVKTLSIEI--------CRKCGEPFTLKQSF--ESRIGVG--AFLVSECGNCFAKKRQLQESYEL---PRPFVCDVCSKSFARKSDFERHQDIHTGIKKFHCDDCGKSFHRNSNLKRHKQTHLVTKEYKCSVCKGNFTRKKYLENHER 283
            C +CGKSFL      G   R   R   S+ C EC   L+ + ++++       E P +      SF  +  F+  +  + T E P VC     S I+   +     +        C +CG+ F  KQS     RI  G   +   ECG  F  K++L E   +    +P+VC +C KSF R SD+ RHQ IHTG + + C DCGK+F     L +H + H   + Y+CS C   F  +  L  H+R
Sbjct:  277 CNICGKSFLHKQTLVGHQQRIHTRE-RSYVCIECGKSLSSKYSLVEHQRTHNGEKPYVCNVCGKSFRHKQTFVGHQQRIHTGERPYVCMECGKSFIHSYDRIRHQRVHTGEGAYQCSECGKSFIYKQSLLDHHRIHTGERPYECKECGKAFIHKKRLLEHQRIHTGEKPYVCIICGKSFIRSSDYMRHQRIHTGERAYECSDCGKAFISKQTLLKHHKIHTRERPYECSECGKGFYLEVKLLQHQR 521
The following BLAST results are available for this feature:
BLAST of TCONS_00042780-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN5498.875e-2531.71Zinc finger protein 549 OS=Homo sapiens GN=ZNF549 ... [more]
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