TCONS_00042588-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00042588-protein
Unique NameTCONS_00042588-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042588-protein ID=TCONS_00042588-protein|Name=TCONS_00042588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp
LPADTKKSYEKLKAAMIARFSSMQTRCSRKAQLAALKRSGFTSLGDYIFK
LETIAFQLGLTSEQKLEALLSGLDEPLRTDVILKEFKTFEEAVPYVTLKD
PITTSTKDSNKMIKEIHAKLSSGQACSVQPNRASNSNQNFEKELERKMSE
MLEEKLQLTAAQPQQLNAFGQTNLASTTDSSREINRLRNEVRLLEQGNGR
PLRDKSIGFNSRYMRSADGQPICYTCQRVGHTSRVCREARGRGRDNNNRR
GSYGGYSNRYDGNTNYYGHYNYQGNNYPGDGNHGGQQNNIGGRGRDPRIP
FNDGRRFVSRPQGPPASATNQQETQQNHSTKRDGNNNAYTTKRNTFNCMI
HQSSSESDLKANSQPNFPDPPYPWYEMEPEEPVKYEELELCSDSGDSDVE
IEYTLRSPPPSYSSQSDTPYLRSGDKKKEEDDVQSRNLEPDGLKVSFEDH
QDRKEANFDTTYDDEEESDFAAKSSETNEVENLIDINASLQDENEVQSTS
K
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026404XLOC_026404Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042588TCONS_00042588Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 473..493
NoneNo IPR availableCOILSCoilCoilcoord: 137..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 353..377
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 397..501
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 240..259
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..341
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 6..75
e-value: 2.7E-5
score: 24.3
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 128..252
e-value: 5.8E-6
score: 26.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 223..238
score: 8.548

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042588-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top