TCONS_00040913-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00040913-protein
Unique NameTCONS_00040913-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00040913-protein ID=TCONS_00040913-protein|Name=TCONS_00040913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
SHLTRLQEEIKQQAWEMVLQNVTIHMNSLPMILDPEGMDIELRKSHLNTV
KMEIYILTQLIEEFESEAAKPDMNTDITKRGKGSKKKSHQSWDWSKERNQ
VLSVINQFLQLELQRLWDPPIVEEEFANLFSSVCYKILENPVVVRQKEDK
ELVINILGQLIKRYKHQLGASMKMIQLLQHFEHLVSPLAQAITTFVTDFG
AKNLVSDVIREIGRMESSDLSRDTSGTRAFSQFLVELADKIPNQVLPNIS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_024968XLOC_024968Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00040913TCONS_00040913Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024324Condensin_cplx_su1_N
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024324Condensin complex subunit 1, N-terminalPFAMPF12922Cnd1_Ncoord: 10..170
e-value: 8.0E-38
score: 129.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..92

Blast
[Close]
BLAST of TCONS_00040913-protein vs. Swiss-Prot (Human)
Match: CND1 (Condensin complex subunit 1 OS=Homo sapiens GN=NCAPD2 PE=1 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 2.844e-56
Identity = 94/244 (38.52%), Postives = 158/244 (64.75%), Query Frame = 0 
Query:    2 HLTRLQEEIKQQAWEMVLQNVTIHMNSLPMILDPEGMDIELRKSHLNTVKMEIYILTQLIEEFESEAAKPDM-NTDITKRGKGSKKKSHQSWDWSKERNQVLSVINQFLQLELQRLWDPPIVEEEFANLFSSVCYKILENPVVVRQKE--DKELVINILGQLIKRYKHQLGASMKMIQLLQHFEHLVSPLAQAITTFVTDFGAKNLVSDVIREIGRMESSDLSRDTSGTRAFSQFLVELADKIP 242
            H   +   +K+   + +++ V+ H   LP ILD   +    R +HLN +KM  Y L +L+E FE+ A++ ++ + D+  +GK ++ K+   +DW +ER  +L ++ Q LQL+++ LW+  I+EEEF +L +  CY++LENP +  QK    +E + ++LG  + RY H L A++K+IQ+LQHFEHL   L  A++ + TD+G K++V +++REIG+    +LSRD SGT+ F+ FL ELA+++P
Sbjct:   69 HFRSIDPGLKEDTLQFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMNCYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLDIRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSATVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGFAAFLTELAERVP 312
The following BLAST results are available for this feature:
BLAST of TCONS_00040913-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CND12.844e-5638.52Condensin complex subunit 1 OS=Homo sapiens GN=NCA... [more]
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