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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00040859-protein ID=TCONS_00040859-protein|Name=TCONS_00040859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=591bp
VSYNIFQVFQKTKVKMFAAMKSGSMASYTPPAPQPVAQPTQSTYTSSSSD
NNRDDSRKAQLKVLGIPEGTDVETLKDFFSDVAKAVGAKILPLQEGRTTA
LGFVDFEKEQDVQNCVNSKNNAMFNGSSLRLFPASGGNNSRPGGNSSGGD
RPQVKVLGIPDGSDEGQLQSLFSEAGNVTRMNILPCREGRNTTLGFVHYN
SQAEVDKAVSLYNDYEFNGSKLRVMSANTPSNGIGGSSAPLSNNFMNGSS
SQRSSSSGMKPQAKVYNIPDGTTEDEITALFGNVGICTGCKILPCREGKD
VTLGFVHFQSEEEVDKAAQMYHDYDFKGSRLRVEGSGGSFPSRQSDSSQS
RPMGRGAQLLANVNAMNGGGGGDFPQRRERGPQAKVFGIPEGTSQDELKD
FFSPAGNVTNTKVLPLREGKDTHLGFIEFSNDSEVQAAVDQFDGQDFKGS
NLKVMVGQTSGGSGGGSSFQNSSWNSSSIAPTSRIPRFGDRSNGGGGMDG
GIQLDANFDMNGGMMGDDMMMNRPPPVNYIPPPPPETEDEIFQLGINEGI
NFEKYFNIPVEITGANAPKPVNNFAEAQLNHVRQLFQEIFP Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000504 | RNA recognition motif domain | SMART | SM00360 | rrm1_1 | coord: 153..225
e-value: 3.5E-11
score: 53.2
coord: 383..455
e-value: 9.6E-14
score: 61.7
coord: 60..132
e-value: 1.3E-9
score: 47.9
coord: 262..334
e-value: 5.8E-12
score: 55.7 |
| IPR000504 | RNA recognition motif domain | PFAM | PF00076 | RRM_1 | coord: 158..223
e-value: 3.0E-8
score: 33.3
coord: 386..453
e-value: 1.1E-12
score: 47.5
coord: 63..129
e-value: 4.7E-10
score: 39.0
coord: 265..332
e-value: 6.2E-10
score: 38.7 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 152..229
score: 12.85 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 59..136
score: 11.094 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 261..338
score: 11.213 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 382..459
score: 14.112 |
| IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 247..339 |
| IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 61..229 |
| IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 386..470 |
| None | No IPR available | GENE3D | 3.30.70.330 | | coord: 21..146
e-value: 6.4E-13
score: 48.3 |
| None | No IPR available | GENE3D | 3.30.70.330 | | coord: 373..464
e-value: 9.8E-15
score: 54.1
coord: 147..234
e-value: 1.3E-12
score: 47.2
coord: 248..352
e-value: 1.0E-13
score: 50.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 333..353 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 133..154 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 27..57 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 461..495 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 233..263 |
| None | No IPR available | CDD | cd00590 | RRM_SF | coord: 386..454
e-value: 3.46558E-15
score: 70.0265 |
| None | No IPR available | CDD | cd00590 | RRM_SF | coord: 61..131
e-value: 6.78297E-10
score: 55.0037 |
| None | No IPR available | CDD | cd00590 | RRM_SF | coord: 265..334
e-value: 6.42755E-13
score: 63.8633 |
| None | No IPR available | CDD | cd00590 | RRM_SF | coord: 154..224
e-value: 2.86E-12
score: 61.9373 |
Blast
The following BLAST results are available for this feature:
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