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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00040574-protein ID=TCONS_00040574-protein|Name=TCONS_00040574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=827bp
MSKKPSEKSKSTDGGTTSGNETLTVTYEQLRTLVNDVVEKDFGPQIMKST
KDTVKAASVQSAENHSTNLAKLKKKLERKRANDNIVLKKTGHQDQFAHNT
AVLETIEDTLEFMEETDVDGMKEALNKDRFWEFEQSAESISVAGKIQKFS
EFWEKDLKASNFALNIVHEGYKIPFESEPPKFFAKNNASSLKNRTFVTDS
ITQLLKDDCIKKVDEPPHCVNPLTVAEGNSKLRLVLDLRHVNRYIKPKKF
KYENLKQVSELTNKNDFLITFDLKSGYHHVPINPDFQTFLGFAWDIDGKR
QYFVFKVLPFGLNIACLVFTKLMRQLVKRWRSMGIKCAMYLDDGIIGNNS
YNSLITMRDLVLNDLQSAGLTVNFTKSSLVPGRTKTWLGFEINTVDMNFE
VPASKIQKLLKLISQALENEFLSAREVSRIAGNLISMAIAIGPLVYLLTK
QMYKFIASSFSWDKRRLINFDVIQELQFWQTNLKNVKAFRIKTKPEITKI
IFSDASGTGYGGYVVEKLGNIIAKGNFCKQEIQTSSTFRELLAVKYILMS
FPKLLENEIIEWFTDNDNICKIISRGSTRQHLQNLAIEIFNLCLSHNVEI
YPTWIPRDMNKTADLISKSMDTDNWSIDNETFNHIIKNYGQITIDRFSDN
QNAKSTVFNSREYCPGTSAVNAFSCNWGNNEFNWLCPPISLVGKTIQHLK
NCRDLLHHDQRYTWCVLCANASVQTRLSRQCLCTNVFEEFVLHLEAHRLT
DGKVQRISLRQIHFEEVQTCLGKMGVLGWSIRRGKLLSCRPFLRSGISKR
SYEFTCNRRNIDRSYSRNQMGALNLRI Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 59..82 |
| None | No IPR available | GENE3D | 3.30.70.270 | | coord: 310..396
e-value: 6.3E-14
score: 51.3 |
| None | No IPR available | GENE3D | 3.10.10.10 | | coord: 172..309
e-value: 4.8E-17
score: 61.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..23 |
| None | No IPR available | CDD | cd03714 | RT_DIRS1 | coord: 271..392
e-value: 4.45889E-29
score: 112.052 |
| None | No IPR available | CDD | cd09275 | RNase_HI_RT_DIRS1 | coord: 500..617
e-value: 1.58651E-16
score: 76.1679 |
| None | No IPR available | SUPERFAMILY | 56672 | DNA/RNA polymerases | coord: 183..588 |
| IPR000477 | Reverse transcriptase domain | PFAM | PF00078 | RVT_1 | coord: 243..392
e-value: 1.9E-18
score: 66.7 |
| IPR000477 | Reverse transcriptase domain | PROSITE | PS50878 | RT_POL | coord: 185..392
score: 17.055 |
| IPR012337 | Ribonuclease H-like domain | GENE3D | 3.30.420.10 | | coord: 499..620
e-value: 3.4E-5
score: 23.1 |
Blast
The following BLAST results are available for this feature:
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