TCONS_00040200-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00040200-protein
Unique NameTCONS_00040200-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length125

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00040200-protein ID=TCONS_00040200-protein|Name=TCONS_00040200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
ITLNKNQLTRLPANISLYIPSITILDLEDNNINKIKQKDFEGYDSIITIF
LQRNGIENLEPRVFQNLSQLEYLYAGGNKLTTLRKGTFTGLAKLRRLFLA
RNDITTVETGVFVDLPSLVTLDLPY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_024394XLOC_024394Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00040200TCONS_00040200Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 19..42
e-value: 38.0
score: 8.5
coord: 67..90
e-value: 0.051
score: 22.7
coord: 91..114
e-value: 0.43
score: 19.6
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 77..123
e-value: 5.4E-13
score: 48.4
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 75..125
e-value: 7.6E-11
score: 41.2
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 1..74
e-value: 6.2E-15
score: 54.3
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 2..124

Blast
[Close]
BLAST of TCONS_00040200-protein vs. Swiss-Prot (Human)
Match: SLIT2 (Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.709e-17
Identity = 44/124 (35.48%), Postives = 68/124 (54.84%), Query Frame = 0 
Query:    1 ITLNKNQLTRLPAN-ISLYIPSITILDLEDNNINKIKQKDFEGYDSIITIFLQRNGIENLEPRVFQNLSQLEYLYAGGNKLTTLRKGTFTGLAKLRRLFLARNDITTVETGVFVDLPSLVTLDL 123
            + LN N+ T L A  I   +P +  ++  +N I  I++  FEG   +  I L  N +EN++ ++F+ L  L+ L    N++T +   +F GL+ +R L L  N ITTV  G F  L SL TL+L
Sbjct:  538 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 661
The following BLAST results are available for this feature:
BLAST of TCONS_00040200-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLIT26.709e-1735.48Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE... [more]
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